Sequence details NCBI ID: XM_004871333.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pbxip1
Gene Name pre-B-cell leukemia homeobox interacting protein 1, transcript variant X5
Entrez Gene ID 101718809

Database interlinks

Part of NW_004624885.1 (Scaffold)

For more information consult the page for NW_004624885.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PBXIP1 ENSCPOG00000005112 (Guinea pig)

Gene Details

pre-B-cell leukemia homeobox interacting protein 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004599, Guinea pig)

Protein Percentage 78.71%
CDS Percentage 84.97%
Ka/Ks Ratio 0.34773 (Ka = 0.1289, Ks = 0.3707)

PBXIP1 ENSG00000163346 (Human)

Gene Details

pre-B-cell leukemia homeobox interacting protein 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000357448, Human)

Protein Percentage 72.51%
CDS Percentage 80.69%
Ka/Ks Ratio 0.27493 (Ka = 0.1635, Ks = 0.5945)

Pbxip1 ENSMUSG00000042613 (Mouse)

Gene Details

pre B cell leukemia transcription factor interacting protein 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000040429, Mouse)

Protein Percentage 66.06%
CDS Percentage 75.21%
Ka/Ks Ratio 0.26075 (Ka = 0.2343, Ks = 0.8986)

Pbxip1 ENSRNOG00000020673 (Rat)

Gene Details

pre-B-cell leukemia homeobox interacting protein 1 (Pbxip1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000028058, Rat)

Protein Percentage 67.19%
CDS Percentage 75.71%
Ka/Ks Ratio 0.27361 (Ka = 0.2265, Ks = 0.8278)

Genome Location

Sequence Coding sequence

Length: 2154 bp    Location: 2526031..2535611   Strand: +
Raw sequence   
>XM_004871333.1
ATGGCCTCCTGCCCAGACTCAGATAATAGCTGGGTGCTTGCCGGTGCAGAGGGCCTGCCTGTGGAGACCCTGGGGCCAGAACCCGGGACAGACCCTGAATCTGAGAGGGACCCCCAGATGCCTCGACAAACCACCCAGGCAGATGGTGCGGAATTAGCTGGGGCCTTGGATGGAGAAGAGAACTTCTTCCAGACGGAAAGACCCCAGGCTGGTCCCACTGTGCCGGAGGAGACTGAGGCCGAGACTGCTGTGGGCAGTGATGGTCCTGGTGTGGAGCCCCCTGGCCCAGGGGACACAGAGCTCCAGGGAGACCTGCAGGAGACCCCCATGGCAGCAAGCCTGGGCCCGGACATGCGAGACCCGGAGGACCAGAGCACCCTGCAGAGCCCGCCCTCCACCCCTAAAACAGGTTGGATTCGGGAGGAGGGCTGCTGCTCCACCAGTGAGGATGACACCGACATGGACGTGGAGGGCCTGCGGAGACGCTGGGGCCCCCAACTGAGCCCGCCTCCGACAGCAGCGCCCTTTGGTGTGGAGGACCAGGCCAGGGCTGGGGGTGCCGGTGGGGAGCTGGGCATCTCGCTCAACATGTGCCTCCTCGGGGCCCTGGTTCTGCTGGGCCTGGGCGTCCTCCTCTTCTCTGGTGGCCTCTCCGAGTTGGACACTGGGCCCGTGGAGGAGGCAGAGCTGCAGGTCTTCTCCGATGCTGGCTCAGACGCTGAGTTGGTGGGTGCCGAGGCAGACGGGCAGGATAGACTGAGGGAACAGCTGCAGGCCTCCGTTTCCGCTGACAGTGTCCCCAGCCTGCAGAACATGGGCCTTCTGCTGGACAGGCTGGCCAAGGAGAACCAGGATATCCGGCTGCTGCAGGCCCAGCTGCAGGCCCAGAAAGAAGAGCTTCAGAGCCTGATGCAGCAGCCCAAAGAGCTGGAGGAGGAGAACGCCCGGCTCAAGGGGGCCCTGCAGCAGGGCGAGGCCTCCCAGCAGGCCCTGGAGTCAGAGTTGCAGCAGCTGCGGACCCGGATCCAGGCACTGGGGGCTGACTGCACCCAGGGCCCAGATGGGGTGTGCCTCAGCTGGGGCCACAGCCCACAGGGCGGCAAGGCCACCATGGAGCAGGACCCAGGGTCCAGCTTCCTAGAGGAGAAGGCACAGCTGGAGGCGGAGGCCCAGGTGCTGAGGAGGGAGCTGCAGAGACAGCGGCAGCTGCTGAACTCTGTGCAGCAGGACCTGCAGAGGAGCTTGCGGGACGCCGGCCGAGGGGACCCTGCCCACGCTGGCCTGGCCGAGCTGGGCCACAGACTGGCCCAGATGCTGAAGGGCCTGCAGAACTGGGGCCTGGACCCTGGGGCCCTGGCCAATGCCTCAGAGGCCTGGCATCAGAAGCCCCAGAGAGCTGGCAAGGGGAAGTGGCATGACGGGCAGAGGGATGGGAAGGCTGAGCACTGGAAGCATAGGAAAGAGTCTGGCTGGGAGAGGAGGAAGAGCTTTGGGGGCGAGGACAGGGAGCCGGCAGGGAGGTGGAAGGAGGACAAACCAGGAGGGGAAAAGTGGGGGGCGTGGAAGGATGGGAAACAACAGGACCCCAAGGAACCCGCGTGGAAAAGTTCGAGTCACCACTCTGGAGAAAGGCAGGAGCATTCCCAGGGAAGGGAGGGGCCTAAAGACAGTCAGGACTCGCTGCCCCACTGGGCGGAGCTGTTGAGGCGCAAGTACAGGGCACCCCAGGGCTGCTCGGGCGTGGCCGGGTGTGCCCGGCAGGAGGGCCTGGCCTTCTTCGGCACGGAGCTGGCCCCCGTGCGGCAGCAGGAGCTGGCCTCTCTGCTGAGGACATACCTTGGGCAGCTTCCCTGGGCCGGGCAGCTGGCCAAGAAACTGCCCTTCTCTCCTGCCTACTTCGATGAGGATGGCGTCTTCCGACACGACCGCCTCCGCTTCCGGGATTTCGTGGATGCCTTGGAAGACAGCCTGGAGGAGGTGGCAGCGAGGTGGACAGGTGATGATGATGAGGTAGATGACTTTGAGGACTTCATCTTCAGCCACCTCTTGGGAGACAAAGCACTGAAGAGGAGGTCAGGGAAGAGGGACAAGCACTTTCGGAGCCCCCGAGTCGTGGGGCCCAGGGAGGAGCACAGGCCCCAGCCCTACCACTGA

Related Sequences

XP_004871390.1 Protein

Pbxip1 PREDICTED: pre-B-cell leukemia transcription factor-interacting protein 1 isoform X5 [Heterocephalus glaber]

Length: 717 aa      View alignments
>XP_004871390.1
MASCPDSDNSWVLAGAEGLPVETLGPEPGTDPESERDPQMPRQTTQADGAELAGALDGEENFFQTERPQAGPTVPEETEAETAVGSDGPGVEPPGPGDTELQGDLQETPMAASLGPDMRDPEDQSTLQSPPSTPKTGWIREEGCCSTSEDDTDMDVEGLRRRWGPQLSPPPTAAPFGVEDQARAGGAGGELGISLNMCLLGALVLLGLGVLLFSGGLSELDTGPVEEAELQVFSDAGSDAELVGAEADGQDRLREQLQASVSADSVPSLQNMGLLLDRLAKENQDIRLLQAQLQAQKEELQSLMQQPKELEEENARLKGALQQGEASQQALESELQQLRTRIQALGADCTQGPDGVCLSWGHSPQGGKATMEQDPGSSFLEEKAQLEAEAQVLRRELQRQRQLLNSVQQDLQRSLRDAGRGDPAHAGLAELGHRLAQMLKGLQNWGLDPGALANASEAWHQKPQRAGKGKWHDGQRDGKAEHWKHRKESGWERRKSFGGEDREPAGRWKEDKPGGEKWGAWKDGKQQDPKEPAWKSSSHHSGERQEHSQGREGPKDSQDSLPHWAELLRRKYRAPQGCSGVAGCARQEGLAFFGTELAPVRQQELASLLRTYLGQLPWAGQLAKKLPFSPAYFDEDGVFRHDRLRFRDFVDALEDSLEEVAARWTGDDDEVDDFEDFIFSHLLGDKALKRRSGKRDKHFRSPRVVGPREEHRPQPYH