Sequence details NCBI ID: XM_004871281.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Thbs3
Gene Name thrombospondin 3, transcript variant X1
Entrez Gene ID 101704466

Database interlinks

Part of NW_004624885.1 (Scaffold)

For more information consult the page for NW_004624885.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

THBS3 ENSCPOG00000003165 (Guinea pig)

Gene Details

thrombospondin 3

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002867, Guinea pig)

Protein Percentage 95.29%
CDS Percentage 91.6%
Ka/Ks Ratio 0.07707 (Ka = 0.0248, Ks = 0.3217)

THBS3 ENSG00000169231 (Human)

Gene Details

thrombospondin 3

External Links

Gene Match (Ensembl Protein ID: ENSP00000357362, Human)

Protein Percentage 95.92%
CDS Percentage 91.04%
Ka/Ks Ratio 0.04942 (Ka = 0.0198, Ks = 0.4008)

Thbs3 ENSMUSG00000028047 (Mouse)

Gene Details

thrombospondin 3

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000029682, Mouse)

Protein Percentage 95.4%
CDS Percentage 88.7%
Ka/Ks Ratio 0.03766 (Ka = 0.0218, Ks = 0.5797)

Thbs3 ENSRNOG00000020524 (Rat)

Gene Details

Protein LOC681309

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000027841, Rat)

Protein Percentage 95.07%
CDS Percentage 87.77%
Ka/Ks Ratio 0.03743 (Ka = 0.0244, Ks = 0.6527)

Genome Location

Sequence Coding sequence

Length: 2871 bp    Location: 2327459..2337461   Strand: +
Raw sequence   
>XM_004871281.1
ATGGAGACGCAGGGACTTCGGGGGGCCCTGGCTCTCCTCTTCCTTTGCTCTTTCGCATCTGCCAGTCAGGACCTGCAGGTCATTGACCTGCTGACTGTGAGTGAGTCCCGGCAGATGGGAGCCGTGGCAGAGAAGATCCGGACAGCCCTACTCACTGCTGGGGACGTCTACCTCCTGTCCACCTTTCGCCTGCCTCCCAAGCAGGGTGGTGTCCTCTTCGGACTGTACTCTCGCCATGACAACACTCGCTGGCTGGAGGCCTCCGTTGTGGGCAAGATTAACAAAGTACTGGTGCGGTACCAGCGGGAGGATGGCAAAGTCCACGCAGTGAATCTACAGCAAGCAGGCCTGGCTGACGGACGCACACACACCGCTCTCCTGCGGCTCCGAGGTCCGTCCCGGCCCAGCCCCAGCCTACAGCTCTATGTGGACTGCAAACTGGGTGACCAGCATGCCAGCCTGCCAGCCCTGGCCCCCATCCCACCAGCAGAGGTCAGTGGGCTGGAGATCCGGACTGGTCAGAAGGCTTATTTGAGGATGCAGGGCTTTGTGGAATCGATGAAAATTATTCTGGGCGGGTCCATGGCCCGGGTAGGAGCCCTGAGTGAGTGTCCATTCCATGGAGACGAGTCCATCCACAGTGCAGTGACCAGTGTGCTGCAGTCCATCCTAGGGGAGCAGACCAAGGCACTGGTCACCCAACTCACCCTCTTCAACCAGATCCTGGTGGAGCTGCGGGATGATATCCGAGAGCAGGTGAAGGAGATGTCCCTGATCCGAAACACCATCATGGAGTGTCAGGTGTGCGGCTTCCACGAGCAGCGTTCGCACTGCAGCCCCAACCCCTGCTTCCCCAGTGTGGACTGCATGGAAGTATATGAGTACCCGGGCTACCGCTGTGGGCCCTGCCCCCCAGGCCTGCAGGGCAACGGCACCCACTGCACCGACATCAATGAGTGCGCTCATGCTGAGCCCTGCTTCCCTGGCTCCAGCTGTATCAACACCGTGCCCGGTTTCCACTGTGAGACCTGTCCTCCAGGGTACAAGGGCACCCGGGTGTCTGGTGTGGGCATCGACTACGCCCGGGCCAGCAGACAGGTCTGCAATGACATCGACGAATGCAACGATGGTAACAATGGTGGCTGTGACCCCAACTCCATCTGCACCAACACTGTGGGGTCTTTCAAATGTGGTCCCTGCCGCCTGGGTTTCCTGGGCAACCAGAGCCAGGGCTGCCTCCCTGCAAGGACCTGCCACAGCCCAGCCCATAGCCCCTGCCATGTTCATGCTCACTGTCTCTTCGAACGCAACGGCGCAGTGTCCTGCCAGTGTAATGTGGGCTGGGCAGGGAACGGGAACGTGTGTGGGCCCGACACGGACATCGATGGCTACCCAGACCAGGCACTGCCCTGCATGGACAACAATAAGCACTGCAAGCAGGACAACTGCCTTTTGACACCCAACTCTGGGCAGGAAGACGCTGATACCGATGGTGTTGGGGACCAGTGTGACGATGACGCTGACGGGGACGGGGTCAAGAATGTGGAGGACAACTGCCGGCTGCTTCCCAACAAGGACCAGCAGAACTCGGATACAGACTCATTTGGCGATGCCTGTGACAACTGCCCCAACGTTCCCAACAATGACCAGAAGGACACTGACGGCAACGGGGAAGGCGATGCCTGCGATGACGACGTGGACGGAGATGGTATCCCCAATGGATTGGACAATTGCCCTAAAGTACCCAACCCACTGCAGACAGACAGGGATGAGGACGGAGTGGGAGACGCTTGCGACAGTTGCCCCGAGATGAGCAATCCTACCCAGACAGATGCAGACAGTGACCTGGTGGGGGACGTCTGTGACACCAATGAAGACAGTGACGGGGATGGGCACCAAGACACCAAGGACAACTGCCCACAGCTGCCCAACAGCTCCCAGCTGGACTCAGACAATGACGGGCTGGGTGACCAGTGTGATGCTGATGATGACAACGATGGTGTCCCGGATTACGTGCCTCCTGGCCCTGACAACTGCCGGCTGGTGCCCAACCCCAACCAGAAGGACTCAGATGGCAATGGCATCGGGGATGCGTGTGAGGACGACTTTGACAATGACGCAGTGCTCGACCCCCTGGACGTGTGTCCCGAGAGTGCAGAGGTCACCCTCACGGACTTCCGGGCCTATCAGACTGTTGTCCTGGATCCTGAGGGTGATGCCCAGATTGACCCAAACTGGGTTGTGCTCAATCAGGGCATGGAAATCGTTCAGACCATGAACAGCGACCCTGGGCTGGCAGTTGGGTACACAGCTTTCAATGGCGTGGATTTCGAAGGCACCTTCCATGTGAACACAGTGACGGACGACGACTATGCAGGCTTTCTCTTCAGTTACCAGGACAGCGGCCGCTTCTATGTGGTCATGTGGAAGCAGACTGAGCAGACCTACTGGCAGGCCACACCTTTCCGGGCTGTTGCCCAGCCCGGGCTGCAGCTCAAGGCAGTGACGTCAGTGTCCGGCCCAGGGGAGCACCTCCGGAATGCCCTGTGGCATACTGGCCACACCCCTGATCAGGTACGACTGCTGTGGACTGATCCCCGGAATGTGGGCTGGCGAGACAAGACTTCCTATCGCTGGCAGCTGCTGCACCGGCCTCAAGTGGGCTACATTCGGGTGAAGCTCTATGAGGGTCCCCAGCTAGTAGCGGATTCTGGGGTGATTATTGACACATCCATGCGAGGCGGGCGTCTCGGTGTATTCTGCTTCTCCCAAGAGAACATCATTTGGTCCAATCTCCAGTACCGCTGCAATGACACAGTGCCTGAGGACTTTGAGCCCTTCCGGAGGCAGCTGCTCCAGGGAAGGGTGTGA

Related Sequences

XP_004871338.1 Protein

Thbs3 PREDICTED: thrombospondin-3 isoform X1 [Heterocephalus glaber]

Length: 956 aa      View alignments
>XP_004871338.1
METQGLRGALALLFLCSFASASQDLQVIDLLTVSESRQMGAVAEKIRTALLTAGDVYLLSTFRLPPKQGGVLFGLYSRHDNTRWLEASVVGKINKVLVRYQREDGKVHAVNLQQAGLADGRTHTALLRLRGPSRPSPSLQLYVDCKLGDQHASLPALAPIPPAEVSGLEIRTGQKAYLRMQGFVESMKIILGGSMARVGALSECPFHGDESIHSAVTSVLQSILGEQTKALVTQLTLFNQILVELRDDIREQVKEMSLIRNTIMECQVCGFHEQRSHCSPNPCFPSVDCMEVYEYPGYRCGPCPPGLQGNGTHCTDINECAHAEPCFPGSSCINTVPGFHCETCPPGYKGTRVSGVGIDYARASRQVCNDIDECNDGNNGGCDPNSICTNTVGSFKCGPCRLGFLGNQSQGCLPARTCHSPAHSPCHVHAHCLFERNGAVSCQCNVGWAGNGNVCGPDTDIDGYPDQALPCMDNNKHCKQDNCLLTPNSGQEDADTDGVGDQCDDDADGDGVKNVEDNCRLLPNKDQQNSDTDSFGDACDNCPNVPNNDQKDTDGNGEGDACDDDVDGDGIPNGLDNCPKVPNPLQTDRDEDGVGDACDSCPEMSNPTQTDADSDLVGDVCDTNEDSDGDGHQDTKDNCPQLPNSSQLDSDNDGLGDQCDADDDNDGVPDYVPPGPDNCRLVPNPNQKDSDGNGIGDACEDDFDNDAVLDPLDVCPESAEVTLTDFRAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTVTDDDYAGFLFSYQDSGRFYVVMWKQTEQTYWQATPFRAVAQPGLQLKAVTSVSGPGEHLRNALWHTGHTPDQVRLLWTDPRNVGWRDKTSYRWQLLHRPQVGYIRVKLYEGPQLVADSGVIIDTSMRGGRLGVFCFSQENIIWSNLQYRCNDTVPEDFEPFRRQLLQGRV