Sequence details NCBI ID: XM_004871255.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Lrrc71
Gene Name leucine rich repeat containing 71, transcript variant X1
Entrez Gene ID 101726527

Database interlinks

Part of NW_004624885.1 (Scaffold)

For more information consult the page for NW_004624885.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LRRC71 ENSCPOG00000003210 (Guinea pig)

Gene Details

leucine rich repeat containing 71

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002907, Guinea pig)

Protein Percentage 67.52%
CDS Percentage 72.45%
Ka/Ks Ratio 0.23371 (Ka = 0.2441, Ks = 1.0442)

LRRC71 ENSG00000160838 (Human)

Gene Details

leucine rich repeat containing 71

External Links

Gene Match (Ensembl Protein ID: ENSP00000336661, Human)

Protein Percentage 60.22%
CDS Percentage 69.08%
Ka/Ks Ratio 0.20864 (Ka = 0.2941, Ks = 1.4094)

Lrrc71 ENSMUSG00000023084 (Mouse)

Gene Details

leucine rich repeat containing 71

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000023846, Mouse)

Protein Percentage 59.24%
CDS Percentage 66.36%
Ka/Ks Ratio 0.21345 (Ka = 0.3252, Ks = 1.5235)

Lrrc71 ENSRNOG00000014937 (Rat)

Gene Details

leucine rich repeat containing 71 (Lrrc71), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000020147, Rat)

Protein Percentage 60.87%
CDS Percentage 66.49%
Ka/Ks Ratio 0.17378 (Ka = 0.3135, Ks = 1.804)

Genome Location

Sequence Coding sequence

Length: 2415 bp    Location: 2032997..2042819   Strand: +
Raw sequence   
>XM_004871255.1
ATGTCGAGCGAGCCGGGGACAGCAGTCAGGACCCCGCGTCCTGGGACCCAGAAGTCTTCCGGCGCGACGACCAAGAAAGGGGAGCGAGCGGCCAAGGAGAAGCCGGCGGCCGCCCAGCCGGCGACGGGCGAGGAGGAGCCCCAAAACCCCGAGGAGTACCAGTGCACCGGGGTGCTGGAGGCCGACTTCGCCGAGCTCTGCGCGCGCTCGGGCTACATCGACTTTCCCAAGGTCGTCACCCGGCCGCGCCCGCACCGGATCTCCGACTCCTCGGCCTCCACGTCCGAAAAGCCCACGCCCGACGAGCAGCGGCTGTCGGCGTCCTGCAGCCTCAACAGCCTGGAGAGCAAGTACGTATTCTTCCGGCCCACCATCCAGGTGGAGCTGGAGCAGGAGGACGGAAAGGCGGTGAAGGAGGTCTACATCCGCGGCTGGAAGTTGGAGAATCGGATCCTGGGGATCTTCTCCATTTGCCTGCCCTCCCTCAGCCAGCTGCAGGCCATCAACCTGTGGAAAGTGGGGCTGACAGATGAAACCCTGACCACCTTCATCACCCTCCTGCCTTCCTGCTCTCCCACGCTCAGGAAGGTGTCTCTGGAGGGAAACCCACTGCCCAAACAGTCGTATCACAAGCTCATGGCCATGGACAGCACGCTCGCTCACCTGTCTCTGCGGAACAACAACATCGACGACCACGGCGCCCAGCTCCTGGGCCAGGCCCTGTCCACGCTGCATGGCAGCAACCGGACCCTGGTGACCCTGAACCTGGCTTTCAACTACATCGGGGACGAGGGCGCGGGCCACCTGGCGGACGGCCTCCGGCTGAACCGCTCTCTGCTCTGGCTGAACCTGGCGCACAACTGCGTCCGGGACAAGGGTGCCCTGAGGCTGGCCGAGGTCCTGCGCCCCTTCGAGCTGACGCACCCCGAGGTGGTGGAGCGCCGGCGCCTCCTGCTGGAGAAGGCGGAGCAGGAGTTGTCGCGATCGCCGACCTCTTCTCGACAAGCGGATGCCAAAACGGAGCGGGGGCAGCCTCACATGGGGGCGGTCAGCAGTGTGGCTCTGGTGGAGAAGATGCAGTCGATGAAAACCCTTAAGGGCCTGATCAAGAAGAAGGAGAAGCCAGGGGTAGGTGTGCATGGGACGGCTGGGTGGACCAGGGGCCCCTCCAAGACGTCTGGAGGGAGGGGAAGGAAGGAGGCCACAGGGCCTCGAGGTCCGCCTCGCCTGGGCTGCCCACACTGGCTGCCCATGCCCTGGAGGTGGGGCTTTCATCCCACCCTCCACAGGAAGTGGTCAAGGAGAAGTCGCCCACACAAGGAACCCCTAAGAAAGAAGACACCACAAAGCCAGGCAAGGGGAGTAAGTGCAGATACCCCTGCGTGGAGGAGGGAAAAGCAGTGGGCCGCACGCAGGAGGCTCTGGCCTGGACATCTGCTGGGAGTGGTCTTGCTCATGCCTCTTTGGGCCTTACCTCTTCCCCACAGTGAGGATGCGGAGAGCCAGACATGGTGGCTCCCCTCCCTTCTGCAGCTCGGACCCCAGAGCTGGGTCCCCAAGGCCCTGTCCTCAGACGAGGAGCCCGCCTACCTAGCTGGGGGCCCTTGCAGTGTTAATCCACACCCAAAGTCTGATAGCCTCACCTCGCCCGTTCTCCCCGGGAACCTGGGTGGTTCCCAAGGGCTGCATTATGCATTCTGGCTCCTTTCTGGCCACAGAGGTAAGCGTCCCCGAGCAGAAGCTGAGCAGGGGAAAGGGGGCCAAGGCAGGGAGCAAGGAGAAGCGCAGCACCCTCTTGGAACCCGAGCAGCTGGTTGCAGAAGCTACAGAGATGATCAACCCCCTCCTGGAGCCCATGGAGCACCGAGACGGGAAGGTTTTCATGCCTGGGAACAAGGTCCTTTTGCACCTCAATCTCCTCCGAAACCGAATCACAGAGGTGGGGCTGGAGGGCTTCCTCACAGCAGTGCAGTACCAGGCGCAGTTCTCCAGGTCCAAGAGTGTGTCCAAGAGCCCAGTGGGGCTGCTATGGCTGTCCCTGGCGAAAAATTGCTTCAACCCACAGTGTCCCATGTACACCATGATCCAGGAGCTCTTGCTGCCGAAGGACCCCATCAAGATCAAGCTTGGGGACGAGGAGGCCCAGCCTTTCTGGCCCTAGCCCCACCACCTTCACTGAGGCTCTGGGCCACAGACATGTCCTGTTGTCACCATCTGTGGGCAGCCCCAGGGCAGACCTCAGACCAGGAAGTCTGCTGCTGTACTTTCCTGTGGGTGTTGGAAAAGTTTGCTTCAGAACTTCGTGTGACATCCGGCCACGATCTGTTCACATCACTGGTCAGGAATGATCCGAATCACCTCCCAGTTCAGCCCCTCCGGGCCAGCTGGCTGGGCAATTGCCCCTCTGCCTCCTGA

Related Sequences

XP_004871312.1 Protein

Lrrc71 PREDICTED: leucine-rich repeat-containing protein 71 isoform X1 [Heterocephalus glaber]

Length: 804 aa      View alignments
>XP_004871312.1
MSSEPGTAVRTPRPGTQKSSGATTKKGERAAKEKPAAAQPATGEEEPQNPEEYQCTGVLEADFAELCARSGYIDFPKVVTRPRPHRISDSSASTSEKPTPDEQRLSASCSLNSLESKYVFFRPTIQVELEQEDGKAVKEVYIRGWKLENRILGIFSICLPSLSQLQAINLWKVGLTDETLTTFITLLPSCSPTLRKVSLEGNPLPKQSYHKLMAMDSTLAHLSLRNNNIDDHGAQLLGQALSTLHGSNRTLVTLNLAFNYIGDEGAGHLADGLRLNRSLLWLNLAHNCVRDKGALRLAEVLRPFELTHPEVVERRRLLLEKAEQELSRSPTSSRQADAKTERGQPHMGAVSSVALVEKMQSMKTLKGLIKKKEKPGVGVHGTAGWTRGPSKTSGGRGRKEATGPRGPPRLGCPHWLPMPWRWGFHPTLHRKWSRRSRPHKEPLRKKTPQSQARGVSADTPAWRREKQWAARRRLWPGHLLGVVLLMPLWALPLPHSEDAESQTWWLPSLLQLGPQSWVPKALSSDEEPAYLAGGPCSVNPHPKSDSLTSPVLPGNLGGSQGLHYAFWLLSGHRGKRPRAEAEQGKGGQGREQGEAQHPLGTRAAGCRSYRDDQPPPGAHGAPRREGFHAWEQGPFAPQSPPKPNHRGGAGGLPHSSAVPGAVLQVQECVQEPSGAAMAVPGEKLLQPTVSHVHHDPGALAAEGPHQDQAWGRGGPAFLALAPPPSLRLWATDMSCCHHLWAAPGQTSDQEVCCCTFLWVLEKFASELRVTSGHDLFTSLVRNDPNHLPVQPLRASWLGNCPSAS