Sequence details NCBI ID: XM_004870496.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Xpc
Gene Name xeroderma pigmentosum, complementation group C, transcript variant X1
Entrez Gene ID 101707002

Database interlinks

Part of NW_004624872.1 (Scaffold)

For more information consult the page for NW_004624872.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

XPC ENSCPOG00000006655 (Guinea pig)

Gene Details

xeroderma pigmentosum, complementation group C

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005994, Guinea pig)

Protein Percentage 84.73%
CDS Percentage 88.4%
Ka/Ks Ratio 0.32397 (Ka = 0.0849, Ks = 0.2621)

XPC ENSG00000154767 (Human)

Gene Details

xeroderma pigmentosum, complementation group C

External Links

Gene Match (Ensembl Protein ID: ENSP00000285021, Human)

Protein Percentage 76.2%
CDS Percentage 81.04%
Ka/Ks Ratio 0.25728 (Ka = 0.1417, Ks = 0.5509)

Xpc ENSMUSG00000030094 (Mouse)

Gene Details

xeroderma pigmentosum, complementation group C

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000032182, Mouse)

Protein Percentage 71.68%
CDS Percentage 76.36%
Ka/Ks Ratio 0.24013 (Ka = 0.1874, Ks = 0.7805)

Xpc ENSRNOG00000008274 (Rat)

Gene Details

xeroderma pigmentosum, complementation group C (Xpc), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000011490, Rat)

Protein Percentage 73.23%
CDS Percentage 76.75%
Ka/Ks Ratio 0.21395 (Ka = 0.1745, Ks = 0.8156)

Genome Location

Sequence Coding sequence

Length: 2769 bp    Location: 1438688..1467204   Strand: +
Raw sequence   
>XM_004870496.1
ATGGCTCGGAAGCGCGCGGCGAGGGGCAGAAAGGCCGGGGACTCGAGCGTGGCCCGGCGTAAGGAGAAGGAGGAGGCAGATGTCTTTGAAGACAAGAAAATGAAACTGCCAAAGAAGAGCTTTCACTCAAAAGTTTCACGAGGAGAGAGGAAGAGAGGCTTCACTGATCCTGGGGCCCCCGCAGATGGTCCAGTAAAAAAGAAAGTGACCAAGGTGACTGTTAAATCTGAAAAACTCAAGGCAATAAAGGATGAACCCCTCAGTGATGGGGAAGATTTCAGGGACTCTTCACGTGGTCTCAAGAAGGCACAACATCCAAAGAGAGAGGCTGCTGTGGACAAAGGTAGTGATGAAAGAGACGAGGAAGAAAGTGAAGATGATTGGGAAGAGGTTGAAGAACTTAGTGGGCCTGCACCTGGTGATGTAGGAGAAAGTTCAACCTCTCAGTCTATTCTGTCTCTGAAACCAGTGGAGATAGAGATTGAAACACCGGAACAGGTGAAAACAAGAGAAAGAAGTGAGAAGATAAAAATGGAGTTTGAGACCTGTCTTCGGAGGATGATGAAACGTTTCAGTAGGGAAGTCCGCGAGAACACACACAAGGTTCACCTACTGTGCCTGCTGGGAAATGGCTTCTATCGAAATGGTGTCTGCAGCCAGCCAGACCTGCTGGCCGTTGGCCTCTCCATCATCCCAGCTCACTTCACGAGGGTGCTTCCTCAAGACGTGGATTCAGGTTACCTCTCCAGCCTGCTGAAGTGGTTCATCGGAACATTTACTGTTAATGCGGACCTTTCAGCACCCGATCAAAGTAGCCTGCAGACCACACTAGAAAGGAGATTCGCTATTTATTCTGCACGAGATGAGGAAGAGTTGGTCCATGTGTTCCTGCTGATTCTGCGTGCCCTGCAGCTCCTGACCCGACTGGTGCTATCTTTGCAGCCCCTTCCTCTGAAGTCCTCCATGGTCAAGGGAAAGAAACCCCCTCAGGAGAGAGCCACAGAGGATCCTGGAGATGCCCCAGGAACTTCCAGTCAAGCTGCAGAAAACCAGCCCAAACTGCAGACCAGCAAAGGAACCAGAGAGCGGGAAGCCTTTCCCAAGGGCCCTGGCAAGGCAGTCACCAAGGGGAAGAGGAGCAAGGCAGCCGCAGGCAGCGCAAAGCAGAGAGAGCCCTCTTCCAGTGAGAGCGAGGAGGCTGGGCCCGGCAAGCAGCAGCCTCGGCACAGCCGGGCCCAGCGCAGGGCCCTCAGGGTGTCTTACAAAGAGGAGAGCGAGAGTGACCTGGCCGCCAGCAGTTCTGACTTTGAGCCTTCCAGTGGGGAAGCCCATCATTCCTCTGATGAGGACTCCGAACCTGCCCCTCGCAGGCAGAGGAGGGCCCCAGCTCCACAGCGGATGAAGGCTGGCTCCAAGAGTGACTCTAGGACCCAGCCAGGGAGCCGCCGCCAGCACCCAGCATCTTCCCGCTCTCCGGGCAGTAAGAGAGGCAAGAAAGTGTCCCAGGATGATGAAGAGGCAGGAGGAGGGAGGGGAGCTGGTGTAGACCAATGGCTGGAGGTGTTCTGTGAGAAGGAGGAGAAGTGGGTGTGTGTGGACTGTGCACATGGGTTGGTGGGCCAGCCCCAGGCCTGTTACAGATACGCCACCAAGCCCATGACCTATGTCGTGGGCATTGACAGCAATGGCTGGGTCCGAGATGTCACTCAGCGGTATGACCCAGCCTGGATGACAGCTACCCGCAAGTGCCGGGTTGATGCTGAGTGGTGGGACGAGACCTTGAGACCCTACCGGAGCCCGTTCATGGAAAGGGAAAAGAAGGAAGACTTGGAGTTTCAGGCAAAGCACCTGGACCAGCCTCTGCCCTCAGCCATCAGCACCTATAAGAACCACCCTCTCTATGCCCTGAAGCGGCACCTCCTGAAGTACGAGGCCATCTACCCAGAGACGGCAGCAGTTCTGGGGTACTGCCGTGGTGAAGCTGTCTACTCCAGGGATTGTGTGCACACCCTGCACTCCAGGGACACATGGCTGAAACAGGCAAGAGTGGTGCGGCTCGGCGAGGTGCCCTACAAGATGGTGAAAGGCTACTCCAACCGCGCCCGCAAAGCCCGGCTCGCTGACCCCCAGCTGCGGGACCAGAATGACCTGGGCCTGTTTGGCCACTGGCAGACTGAGGAGTACCAGCCCCCTGTGGCTGTGGATGGGAAGGTGCCACGGAACGAGTTTGGGAACGTGTACCTTTTCCTGCCTAGCATGATGCCCGTCGGCTGTGTGCAGCTGCACCTGCCCAATCTGCATCGCGTGGCCCGCAAGCTGGACATTGACTGTGCCCCGGCCGTCACAGGCTTCGACTTCCATGGTGGCTACTGCCATGCTGTAACCAATGGCTATGTTGTCTGCGAGGAATTCAGAGATGTGCTCCTCACTGCCTGGGAGAATGAGCAGGCCCTCATTGAGAAGAAGGAGAAGGAGAGACGTGAGAAGCGGGCCCTGGGGAACTGGAAGCTGCTGGCCCGGGGACTGCTCATCAGGGAGAGGCTGCGAATGCGCTACAGTGCCCAGAGTGATGCAGCAGCTCCGCACACGGGTGCAGGAGGTGGGCTGTCCGACAACGAGGAGGGGACCAGCTCGCAAGCAGAGGCGGCCAGGGTCCTGGTTGCCTCTTGGCCTCAGAACCGAGAAGCTGAGGAAGAGCAGAAGCCAAGGAAGACCAGAAGGGCAAAGAAGGAGTCTGCCAGCCACTTGTTCCCATTCGAGAAGTTGTGA

Related Sequences

XP_004870553.1 Protein

Xpc PREDICTED: DNA repair protein complementing XP-C cells isoform X1 [Heterocephalus glaber]

Length: 922 aa      View alignments
>XP_004870553.1
MARKRAARGRKAGDSSVARRKEKEEADVFEDKKMKLPKKSFHSKVSRGERKRGFTDPGAPADGPVKKKVTKVTVKSEKLKAIKDEPLSDGEDFRDSSRGLKKAQHPKREAAVDKGSDERDEEESEDDWEEVEELSGPAPGDVGESSTSQSILSLKPVEIEIETPEQVKTRERSEKIKMEFETCLRRMMKRFSREVRENTHKVHLLCLLGNGFYRNGVCSQPDLLAVGLSIIPAHFTRVLPQDVDSGYLSSLLKWFIGTFTVNADLSAPDQSSLQTTLERRFAIYSARDEEELVHVFLLILRALQLLTRLVLSLQPLPLKSSMVKGKKPPQERATEDPGDAPGTSSQAAENQPKLQTSKGTREREAFPKGPGKAVTKGKRSKAAAGSAKQREPSSSESEEAGPGKQQPRHSRAQRRALRVSYKEESESDLAASSSDFEPSSGEAHHSSDEDSEPAPRRQRRAPAPQRMKAGSKSDSRTQPGSRRQHPASSRSPGSKRGKKVSQDDEEAGGGRGAGVDQWLEVFCEKEEKWVCVDCAHGLVGQPQACYRYATKPMTYVVGIDSNGWVRDVTQRYDPAWMTATRKCRVDAEWWDETLRPYRSPFMEREKKEDLEFQAKHLDQPLPSAISTYKNHPLYALKRHLLKYEAIYPETAAVLGYCRGEAVYSRDCVHTLHSRDTWLKQARVVRLGEVPYKMVKGYSNRARKARLADPQLRDQNDLGLFGHWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPVGCVQLHLPNLHRVARKLDIDCAPAVTGFDFHGGYCHAVTNGYVVCEEFRDVLLTAWENEQALIEKKEKERREKRALGNWKLLARGLLIRERLRMRYSAQSDAAAPHTGAGGGLSDNEEGTSSQAEAARVLVASWPQNREAEEEQKPRKTRRAKKESASHLFPFEKL