Sequence details NCBI ID: XM_004870007.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Prpf40a
Gene Name PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)
Entrez Gene ID 101718799

Database interlinks

Part of NW_004624866.1 (Scaffold)

For more information consult the page for NW_004624866.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PRPF40A ENSCPOG00000013494 (Guinea pig)

Gene Details

PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012150, Guinea pig)

Protein Percentage 94.41%
CDS Percentage 92.89%
Ka/Ks Ratio 0.11786 (Ka = 0.0332, Ks = 0.2815)

PRPF40A ENSG00000196504 (Human)

Gene Details

PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000386458, Human)

Protein Percentage 98.17%
CDS Percentage 94.39%
Ka/Ks Ratio 0.02724 (Ka = 0.0079, Ks = 0.2911)

Prpf40a ENSMUSG00000061136 (Mouse)

Gene Details

PRP40 pre-mRNA processing factor 40 homolog A (yeast)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000075655, Mouse)

Protein Percentage 94.16%
CDS Percentage 90.12%
Ka/Ks Ratio 0.0643 (Ka = 0.0311, Ks = 0.483)

Prpf40a ENSRNOG00000004864 (Rat)

Gene Details

PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) (Prpf40a), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000006549, Rat)

Protein Percentage 94.37%
CDS Percentage 90.12%
Ka/Ks Ratio 0.06349 (Ka = 0.0307, Ks = 0.4835)

Genome Location

Sequence Coding sequence

Length: 2784 bp    Location: 4369648..4429204   Strand: +
Raw sequence   
>XM_004870007.1
ATGTGTAGCGGCAGTGGCCGCCGGCGAAGCAGTCTGAGCCCTACGATGAGGCCGGGGACTGGAGCCGAGCGTGGAGGCCTCATGATGGGGCACCCTGGCATGCATTATGCACCAATGGGAATGCACCCTATGGGTCAGAGAGCAAATATGCCTCCTGTACCTCATGGAATGATGCCTCAAATGATGCCCCCTATGGGAGGGCCACCAATGGGACAAATGCCTGGAATGATGTCTTCAGTAATGCCTGGGATGATGATGTCTCATATGTCTCAGGCTTCCATGCAACCTACCTTACCGCCAGGGGTAAATAGTATGGATGTAGCAGCAGGTACAGCATCTGGTGCAAAATCAATGTGGACTGAACATAAATCACCTGATGGAAGGACTTATTACTACAATACTGAAACAAAACAGTCCACCTGGGAGAAACCAGATGATCTTAAAACACCTGCTGAGCAACTGTTATCTAAATGCCCTTGGAAGGAATATAAATCTGACTCTGGAAAGCCTTACTATTATAATTCTCAAACTAAAGAATCCCGCTGGGCCAAACCTAAAGAACTCGAGGATCTTGAAGGATACCAGAATACCATTGTTGCTGGAGGTCTTATTACAAAATCAAACCTGCATGCCATGATCAAAGCTGAAGAAAGCAGCAAACAAGAAGATTGCAGCACATCAACAGCCCCAGTTCCTACAACAGAAATTCCTACCACTATGACCACCATGGCTGCTGCAGAAGCAGCAGCTGCTGTGGTTGCAGCTGCAGCTGCAGCTGCAGCAGCTGCTGCAGCAGCCAATGCCAGTGCTTCCACTTCTACTACTAATACTGTCGGAACTGTTCCAGTTGTTCCTGAGCCTGAAGTTACTTCCATTGTGGCTACCGTTGTAGATAATGAAAGTACAGTAACTATATCAACTGAAGAACAAGCACAGCTTACTAATACCACTGCTATTCAGGATCTAAGTGTTGAAGTATCTAATAATGCAGAAGAAACATCAAAGCAGGAAACTGTAGCTGATTTTACTCCAAAAAAAGAAGAGGAAGAGAGCCAACCAGCAAAAAAAACATATACTTGGAATACAAAGGAAGAGGCAAAGCAGGCATTCAAAGAATTATTGAAAGAAAAGCGGGTACCTTCCAATGCTTCATGGGAGCAAGCTATGAAAATGATCATTAATGATCCACGATACAGTGCTTTAGCAAAGTTGAGTGAGAAAAAGCAGGCCTTTAATGCCTATAAAGTCCAGACAGAGAAAGAAGAAAAAGAAGAAGCAAGATCAAAATATAAAGAAGCTAAGGAATCCTTTCAGCGTTTTCTTGAAAATCATGAGAAAATGACTTCTACAACCAGATATAAAAAAGCAGAGCAAATGTTTGGAGAGATGGAAGTCTGGAATGCAATATCAGAACGTGATCGTCTGGAAATCTATGAAGATGTTTTATTCTTTCTGTCAAAAAAAGAAAAGGAGCAAGCAAAGCAGTTGCGAAAGAGAAATTGGGAAGCCTTAAAAAATATACTTGATAATATGGCTAACGTAACATACTCTACTACTTGGTCTGAGGCCCAGCAGTATCTGATGGATAATCCAACTTTTGCAGAAGATGAGGAGTTACAGAACATGGACAAAGAAGATGCATTAATTTGCTTTGAAGAGCACATTCGGGCTTTAGAAAAGGAAGAGGAAGAAGAAAAACAGAAGAGTTTGCTGAGAGAAAGGAGACGGCAGCGTAAAAATAGAGAATCTTTTCAGATATTTTTAGATGAACTGCATGAACATGGACAACTACATTCTATGTCATCTTGGATGAAATTGTATCCAACCATTAGTTCTGACATTAGATTCACTAATATGCTTGGTCAGCCTGGATCAACTGCACTTGATCTTTTCAAGTTTTATGTTGAGGATCTTAAAGCACGTTATCATGATGAAAAAAAAATAATAAAAGACATTCTAAAGGATAAAGGATTTGTAGTTGAAGTAAATACTACATTTGAAGATTTTGTGGCAATAATTAGTTCAACTAAAAGATCAACTACCTTGGATGCTGGAAATATCAAGTTGGCTTTCAATAGTTTACTGGAAAAGGCAGAAGCCCGTGAACGTGAAAGAGAAAAAGAAGAGGCTCGGAAAATGAAACGAAAAGAATCTGCATTTAAGAGCATGTTGAAACAAGCTGCTCCTCCAATAGAATTGGATGCCGTCTGGGAAGATATCCGGGAGAGATTTGTAAAAGAGCCAGCATTTGAGGACATAACTCTAGAGTCTGAAAGAAAAAGAATATTTAAAGATTTTATGCATGTCCTTGAGCATGAGTGTCAGCATCATCATTCAAAGAATAAGAAACATTCTAAGAAATCTAAGAAACATCATAGAAAACGTTCCCGCTCTCGATCGGGGTCAGATTCAGATGATGATGACAGCCATTCAAAGAAAAAAAGACAGCGATCAGAGTCCCGTTCTGCTTCAGAACATTCTTCTAGTGCTGAATCTGAGAGAAGTTATAAAAAATCAAAAAAGCATAAGAAGAAAAGCAAGAAGAGGAGACATAAATCTGACTCTCCAGAATCAGATGCTGAGCGAGAAAAGGATAAAAAAGAAAAAGATCGGGAAAATGAAAAGGATAGAACTAGACAGAGATCAGAATCAAAACACAAATCACCTAAGAAAAAGACTGGGAAGGATTCTGGTAATTGGGATACTTCTGGCAGTGAACTGAGTGAAGGGGAATTAGAAAAGCGGAGAAGAACCCTTTTGGAACAACTGGACGATGATCAATAA

Related Sequences

XP_004870064.1 Protein

Prpf40a PREDICTED: pre-mRNA-processing factor 40 homolog A [Heterocephalus glaber]

Length: 927 aa      View alignments
>XP_004870064.1
MCSGSGRRRSSLSPTMRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPTLPPGVNSMDVAAGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTIVAGGLITKSNLHAMIKAEESSKQEDCSTSTAPVPTTEIPTTMTTMAAAEAAAAVVAAAAAAAAAAAAANASASTSTTNTVGTVPVVPEPEVTSIVATVVDNESTVTISTEEQAQLTNTTAIQDLSVEVSNNAEETSKQETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMKLYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRENEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ