Sequence details NCBI ID: XM_004869991.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Mbd5
Gene Name methyl-CpG binding domain protein 5, transcript variant X6
Entrez Gene ID 101708541

Database interlinks

Part of NW_004624866.1 (Scaffold)

For more information consult the page for NW_004624866.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

MBD5 ENSCPOG00000006236 (Guinea pig)

Gene Details

methyl-CpG binding domain protein 5

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005624, Guinea pig)

Protein Percentage 96.93%
CDS Percentage 96.69%
Ka/Ks Ratio 0.16919 (Ka = 0.0147, Ks = 0.0867)

MBD5 ENSG00000204406 (Human)

Gene Details

methyl-CpG binding domain protein 5

External Links

Gene Match (Ensembl Protein ID: ENSP00000386049, Human)

Protein Percentage 95.92%
CDS Percentage 96.05%
Ka/Ks Ratio 0.19267 (Ka = 0.0198, Ks = 0.1027)

Mbd5 ENSMUSG00000036792 (Mouse)

Gene Details

methyl-CpG binding domain protein 5

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000036847, Mouse)

Protein Percentage 93.85%
CDS Percentage 92.92%
Ka/Ks Ratio 0.14483 (Ka = 0.0305, Ks = 0.2105)

Mbd5 ENSRNOG00000027596 (Rat)

Gene Details

methyl-CpG binding domain protein 5

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000031544, Rat)

Protein Percentage 92.6%
CDS Percentage 92.13%
Ka/Ks Ratio 0.16946 (Ka = 0.0379, Ks = 0.2235)

Genome Location

Sequence Coding sequence

Length: 4500 bp    Location: 717547..1162834   Strand: +
Raw sequence   
>XM_004869991.1
ATGAATGGAGGCAAGGAGTGTGACGGAGGGGGCAAGGAAGGAGGTCTTCCAGCTATACAAGTTCCTGTGGGTTGGCAGCGCCGCGCGGATCAAAATGGAGTTCTTTATGTCAGTCCCAGTGGGTCTTTGTTATCTTGCTTGGAGCAGGTTAAAACATACCTGCTTACTGATGGAACATGCAAGTGCGGCTTGGAATGTCCTCTTATTCTTCCCAAGGTATTTAATTTTGATCCTGGAGCTGCTGTGAAACAGAGAACTGCAGAAGATGTTAAGGCAGATGAAGATGTCACAAAACTATGCATACATAAAAGAAAAATCATTGCAGTGGCCACACTTCATAAAAGCATGGAAGCCCCACACCCTTCTCTGGTGCTCACCAGTCCTGGAGGAGGAACAAATGCAACTCCAGTAGTACCTTCACGGGCAGCAACTCCAAGATCAGTAAGAAATAAGTCTCATGAAGGAATTACAAATTCTGTAATGCCTGAATGTAAGAATCCTTTCAAGTTAATGATTGGATCATCCAATGCCATGGGAAGACTGTATGTACAAGAACTTCCTGCAAGCCAGCAACAAGAACTCCACCCTGTCTATCCTCGGCAGAGATTGGGCAGCAGTGAACATGGACAGAAATCTCCATTCCGAGGCAGCCATGGAGGCCTGCCCAGCCCAGCATCATCAGGTTCCCAGATTTATGGAGATGGCTCAATCTCTCCGAGGACTGACCCACTTGGAAGCCCAGATATTTTCACAAGAAATAATCCTGGTTTTCATGGAGCTCCCAGTTCTAGTCCTATTCACCTGAATAGGACTCCTCTTTCTCCACCTTCAGTAATGCTACATGGTTCTCCTGTACAGTCATCCTGTGCAATGGCTGGAAGGACTAATATACCTCTTTCCCCAACCTTGACTACAAAGAGTCCAGTAATGAAAACACCAATGTGTAATTTTTCAACTAATATGGAAATGCCACGAGCAATGTTCCACCACAAACCACCCCAAGGCCCACCTCCCCCTCCTCCACCTTCTTGTGCTCTTCAGAAAAAGCCATTAACACCTGAGAAAGATCCACTTGGCATTCTTGACCCGATTCCTAGTAAACCAGTGAATCAGAACCCTGTTATCATTCATCCAACCAGTTTCCATTCAAACGTCCACTCTCAGGTACCTGTGATGAATGTAAGCATGCCTCCTGCTGTTGTTCCTTTGCCAAGTAATCTCCCTTTGCCAACTGTAAAACCTGGTCACATGAATCATGGGAGTCATGTACAAAGAGTTCAGCATTCAGCTTCAACCTCCCTCTCCCCTTCTCCAGTGACATCCCCAGTGCACATGATGGGGACTGGAATTGGAAGGATTGAGGCATCGCCCCAAAGATCACGCTCATCTTCCACATCATCAGATCATGGAAATTTCATGATGCCACCTGTAGGACCCCAGGCCACCTGTAGTGGTATTAAGGTTCCACCCAGGTCACCACGGTCAACAATAGGGTCCCCAAGGCCATCAATGCCATCAAGCCCTTCTACCAAGTCCGATGGACATCATCAGTACAAGGAAATCCCTAACCCATTAATTGCTGGAATGAGTAATGTACTAAATACTCCAAGCAGTGCAGCTTTTCCTAGTGCATCTGCCGGAAGTGCTTCTGTAAAGAGTCAGCCTGGTTTGCTGGGAATGCCTTTAAATCAGATCTTGAACCAGCACAATGCTGCCTCCTTTCCAGCAAGTAGTTTACTCTCAGCAGCAGCCAAAGCACAGCTAGCAAATCAAAACAAACTTGCTGGTAACAACAGTAGCAGCAGTAGCAGTTCTGGAGCTGTTGCTGGCAGTGGTAACACTGAAGGACATAGCACTTTAAACACCATGTTCCCTCCTACTGCCAACGTGCTTCTTCCAACAGGTGAAGGGCAAAGTGGTCGAGCAGCACTAAGAGATAAGTTGATGTCTCAGCAAAAAGACTCGTTACGAAAAAGAAAACAGCCACCTACCACAGTGTTGAGTTTGCTCAGACAGTCTCAAATGGATAGTTCTGCGGTTCCTAAACCTGGACCTGACTTGCTAAGGAAGCAGAGTCAGGGTTCATTTCCCATCAGTTCAATGTCTCAGTTACTACAGTCTATGAGTGGTCAAAGCTCTCACTTGAGTAGCAATAGTACCCCAGGTTGTGGGGGCTCAAATACTGCTTTGCCTTGCTCTGCTAACCAGCTGCATTTTACAGATCCCAACATAAACTCCAGTGTTCTGCAGAATTCACTGACACAGAACATACCTTTAAGAGGGGAAGCCGTGCACTGCCACAATGCAAACACTAACTTTGTTCACAGTAACAGCCCAGTCCCTAACCACCATCTTGCAGGTTTAATAAATCAGATTCAGGCTAGCGGGAACTGTGGGATGCTCAGTCAGTCGGGCGTGGCTTTAGGAAATTCATTACATCCCAATCCACCTCAGTCAAGAATTTCAACGTCCTCCACTCCAGTGATACCAAACAGCATTGTTAGCAGCTATAATCAAACAAGTTCTGAAGCAGGAAGTACAGGTCCATCTTCCTCCGTAGCCATAGCTGGCTCCAATCATCCTGCCATCACAAAGACAACATCTGTTCTTCAGGATGGAGTCATAGTCACCACCGCAACTGGAAACCCCCTGCAGAATCAACTGCCCATTGGGAGTGATTTTCCTTTTGTTGGCCAGGAGCACGCACTTCATTTTCCATCCAACAGCACTTCAAACAACCATCTTCCACACCCCTTGAACCCCAGCCTCCTCAGTTCTCTACCTATCTCTTTGCCAGTGAATCAACAGCATCTCCTAAACCAGAATCTATTAAATATCCTCCAGCCTTCAGCAGGAGAAGGTGATATGTCATCAATAAACAATACTTTGAATAACCATCAACTGGCTCATCTGCAGTCGCTGTTAAACAACAATCAGATGTTTCCTCCAAATCAACAACAGCAGCAACTTCTCCAGGGATACCAGAATCTCCAGGCCTTCCAAGGACAGCCCTCAGTCCCCTGTCCCACTAACAGTAACCCCATGGCTTGTCTGTTTCAGAACTTTCAGGTGAGAATGCAAGAAGATGCAGCTCTCCTAAACAAAAGAATAAGCACTCAGCCAGGGCTCACAGCAGTTCCTGAGAATCCAAACACTACACTTCCACCTTTCCAAGATACATCGTGTGAGTTGCAACAAAGGATCGACCCGTCTCTTGGTCAGCAGGTGAAGGATGGTCTTGTTATGGGTAGCCAAGGTGATGCTTCCATAGATGCCATTTACAAAGCAGTTGTCGATGCAGCCAGCAAAGGAATGCAGGTTGTCATTACCACTGCTGTCAACAGTACAACTCAGATCAGCCCTATTCCAGCTCTGAGTGCCATGAGTGCCTTCACTGCCTCGATTGGCGACCCATTAAATCTCTCCAGTGCTGTCAGTGCGGTCATTCATGGACGGAACATGGCAGGTGTTGATCATGATGGCAGGGTGAGGAATGCAAGAGGGACCCGGCTGTCCAAGAATCTAGACCATGGGAAAAATTCAAATGAAGGAGATGGGTTTGAGTATTTCAAGTCAGCAAGTTGCCACACATCCAAAAAACAGTGGGATGGGGAGCAAAGCCCCAGAGGGGAGCGAAACAGGTGGAAGTACGAGGAATTTTTAGATCATCCAGGCCATATCCACAGTAGTCCTTGTCACGAAAGGCCCAACAATGTCTCTACACTGCCATTTCTGCCTGGGGAACAGCACCCAATACTGTTACCACCAAGAAACTGTCAAGGGGATAAAATTCTGGAAGAGAGTTTCAAATATAATAACTACAAAAGAACTATGATAAGTTTTAAGGAGAGACTAGAGAGCACTGTGGAAAGATGTGCACACATCAATGGGAACAGACCTCGACAGAGCCGGGGATTTGGAGAGCTGCTAAGCACTGCAAAGCAAGACCTAGTCCTAGAGGAGCAGTCACCAAGTTCCTCAAATAGTTTGGAAAGTTCTCTGGTCAAAGACTACATCCATTACAATGGAGACTTTAATGCCAAAAGCATTAATGGGTGTGTGCCCAGCCCTTCAGATGCTAAAAGCATTAGTAGTGAAGATGACCTAAGGAATCCAGACTCCCCTTCTTCAAATGAGTTGATACATTATGGACCAAGGACGTTCAATGTTGGCGACTTGGTCTGGGGCCAAATCAAAGGACTGACTTCCTGGCCTGGAAAATTAGTAAGAGAAGACGACGTTCACAATTCATGTCAACAAAGCCCCGAGGAAGGGAAGGTGGAGCCCGAGAAGTTGAAGACACTAACAGAAGGTTTGGAAGCCTACAGCCGAGCCCGGAAAAGAAACAGAAAAAGTGGAAAGCTAAATAACCATTTAGAAGCTGCTATTCATGAGGCCATGAGCGAACTGGACAAAATGTCTGGGAGTGTTCACCAAATCCCACAGGGAGACAGACAAATGAGACCACCCAAGCCCAAGAGGAGGAAGATCTCCAGATAA

Related Sequences

XP_004870048.1 Protein

Mbd5 PREDICTED: methyl-CpG-binding domain protein 5 isoform X6 [Heterocephalus glaber]

Length: 1499 aa      View alignments
>XP_004870048.1
MNGGKECDGGGKEGGLPAIQVPVGWQRRADQNGVLYVSPSGSLLSCLEQVKTYLLTDGTCKCGLECPLILPKVFNFDPGAAVKQRTAEDVKADEDVTKLCIHKRKIIAVATLHKSMEAPHPSLVLTSPGGGTNATPVVPSRAATPRSVRNKSHEGITNSVMPECKNPFKLMIGSSNAMGRLYVQELPASQQQELHPVYPRQRLGSSEHGQKSPFRGSHGGLPSPASSGSQIYGDGSISPRTDPLGSPDIFTRNNPGFHGAPSSSPIHLNRTPLSPPSVMLHGSPVQSSCAMAGRTNIPLSPTLTTKSPVMKTPMCNFSTNMEMPRAMFHHKPPQGPPPPPPPSCALQKKPLTPEKDPLGILDPIPSKPVNQNPVIIHPTSFHSNVHSQVPVMNVSMPPAVVPLPSNLPLPTVKPGHMNHGSHVQRVQHSASTSLSPSPVTSPVHMMGTGIGRIEASPQRSRSSSTSSDHGNFMMPPVGPQATCSGIKVPPRSPRSTIGSPRPSMPSSPSTKSDGHHQYKEIPNPLIAGMSNVLNTPSSAAFPSASAGSASVKSQPGLLGMPLNQILNQHNAASFPASSLLSAAAKAQLANQNKLAGNNSSSSSSSGAVAGSGNTEGHSTLNTMFPPTANVLLPTGEGQSGRAALRDKLMSQQKDSLRKRKQPPTTVLSLLRQSQMDSSAVPKPGPDLLRKQSQGSFPISSMSQLLQSMSGQSSHLSSNSTPGCGGSNTALPCSANQLHFTDPNINSSVLQNSLTQNIPLRGEAVHCHNANTNFVHSNSPVPNHHLAGLINQIQASGNCGMLSQSGVALGNSLHPNPPQSRISTSSTPVIPNSIVSSYNQTSSEAGSTGPSSSVAIAGSNHPAITKTTSVLQDGVIVTTATGNPLQNQLPIGSDFPFVGQEHALHFPSNSTSNNHLPHPLNPSLLSSLPISLPVNQQHLLNQNLLNILQPSAGEGDMSSINNTLNNHQLAHLQSLLNNNQMFPPNQQQQQLLQGYQNLQAFQGQPSVPCPTNSNPMACLFQNFQVRMQEDAALLNKRISTQPGLTAVPENPNTTLPPFQDTSCELQQRIDPSLGQQVKDGLVMGSQGDASIDAIYKAVVDAASKGMQVVITTAVNSTTQISPIPALSAMSAFTASIGDPLNLSSAVSAVIHGRNMAGVDHDGRVRNARGTRLSKNLDHGKNSNEGDGFEYFKSASCHTSKKQWDGEQSPRGERNRWKYEEFLDHPGHIHSSPCHERPNNVSTLPFLPGEQHPILLPPRNCQGDKILEESFKYNNYKRTMISFKERLESTVERCAHINGNRPRQSRGFGELLSTAKQDLVLEEQSPSSSNSLESSLVKDYIHYNGDFNAKSINGCVPSPSDAKSISSEDDLRNPDSPSSNELIHYGPRTFNVGDLVWGQIKGLTSWPGKLVREDDVHNSCQQSPEEGKVEPEKLKTLTEGLEAYSRARKRNRKSGKLNNHLEAAIHEAMSELDKMSGSVHQIPQGDRQMRPPKPKRRKISR