Details from NCBI annotation

Gene Symbol Taf1b
Gene Name TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa, transcript variant X5
Entrez Gene ID 101701724

Database interlinks

Part of NW_004624865.1 (Scaffold)

For more information consult the page for NW_004624865.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TAF1B ENSCPOG00000010780 (Guinea pig)

Gene Details

TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009679, Guinea pig)

Protein Percentage 84.1%
CDS Percentage 85.98%
Ka/Ks Ratio 0.19618 (Ka = 0.0854, Ks = 0.4356)

TAF1B ENSG00000115750 (Human)

Gene Details

TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa

External Links

Gene Match (Ensembl Protein ID: ENSP00000263663, Human)

Protein Percentage 77.95%
CDS Percentage 80.63%
Ka/Ks Ratio 0.18572 (Ka = 0.1273, Ks = 0.6855)

Taf1b ENSMUSG00000059669 (Mouse)

Gene Details

TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000075339, Mouse)

Protein Percentage 73.71%
CDS Percentage 77.95%
Ka/Ks Ratio 0.19704 (Ka = 0.1576, Ks = 0.7998)

Taf1b ENSRNOG00000004506 (Rat)

Gene Details

TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B (Taf1b), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000006187, Rat)

Protein Percentage 74.1%
CDS Percentage 77.82%
Ka/Ks Ratio 0.19842 (Ka = 0.1589, Ks = 0.8008)

Genome Location

Sequence Coding sequence

Length: 1782 bp    Location: 5128159..5089298   Strand: -
>XM_004869974.1
ATGGAGCTGGAGGAGGCGAAAGAGTTAAAAGAGCGCTGTTCTCAGTGTGATGCTATCTCTTGGGGTCTCACTGAGGAAGGGAAATATTACTGCACTTCCTGCCACAATGTTACAGAGAGATCTAAGGAAGTTATCAACACTGACATTATTCCTAACACCAAGATAAAATCCATCAGCAGAGGCCTCAAAAGAAAAAGCAAACTAGAAAAAGGCTGGGATTGGTATGTGTGCGAAGGATTTCAGCACATACTTTGTCAGCAAGCAGAAGTGCTGAAGACCCTCGGAGTAGCCCCAGAATTAAAGAATGAAGTTTTACACAATTTTTGGAAGCGCTACCTGCAGAAAAGTAAGCAGGCATATTGTGCAAACCCGGTGTACACCAGTGGAAGGAAGGCCCAGGTGTTGAAAGATAATGTCCATCATTCAGACTGGGCGAGTGGGTCTGAACTGCTCAGCGATGCTAGCTGTGCTTCCAGCCTTGAAAGTGGAGCTGAGTCGAAGTCTGACGTCCCAACACCAAAGCCTTTTCCTGCCCTGAGAACACCACAGTCAGAGTCTCGCTCTGTCCCTGCAGTGGCTGCATCTGTCTGTTCCGGGTCCCTCGATGGCATGGAGTACTCGGAGTGGAAGGAGAAAGGCATCTTGAAGATGACAGTGCCGGGGACACTCGCTCTCTGCTACCTGTCCTTGCTGTGGCAGAGAGAAGCAGTGACTCTCTCCGATCTTCTGAGATTTGTTGAAGAGGATCACATTCCTTACATAAAGGCTTTTCAGAGTTTCCCAGAAGAGATGAAGTTGTATGGACGTGACAAAGGAATCTTTGCTATAGAGTCTTGGCCTGACTATGAGGAGATCTATAAACACATGTTTGAAATCGCCACGTTTTTAGATTTGCCCCGTTTTCCAGACATCACCGAAGACTGCTTCCTTCACCCCAACATCCTATGTGTGAAGTATCTGATGGAAGCCAACCTCCCTGATGAAATGCACGGGTTAACCCACCAAGTGACAAAGATGACCGGGCTGGGGGACGTGGATTCTCTGACATTTGACCCGATAGCTAAAGGTGCCCAAACAGTGAAATATGATGTGCAGGCCATAGCTCTCATTGTGGTGGTCTTGAAACTGCTCTTCCTATTGGATGACAATTTAGAATGGTCTTTGTCTGATCTCGCTGAAGTCAATAATGAAAAGAACAAAACAGATAAACCATGGTTCAGTTTCAGAAAGTGGTACCAAGTCATGAAGAAAAGTGTGGATGAGAAGAAACAAAATTGGGAGGAAGCAAGAGCCAAGTACCTGTGGAAGAGCGAGAAGCCACTCTACCACTCGCACATCGACAAGCCGGGGGCGTCCAAGAGAAGGGAAATGGTGGTGAATCTACAGAAACAGTTTAGTACACTGGCCGATTCAGCACCGACCATTGAGAAGAAAAGCCCTTCGAGTTTCCAGTTCCACTGGGCCGAAGACGACCCCTCCAGGCCCTGTTTCCATGGCCACAGCCTCCAGGGCATCCTGGTAAAGAAAGGCCCAGCACTGGTGACCAAGAATTCCTTGTACTGGCTGAGCACTCAGAAGTTCTGCAGGAGCTACTGCAAACACGTGACCACCTATGAAGAATCCAATTTCTCTCTGAGCTACCAGTTTATACTAAACCTCTTCTCCTTCCTGCTGAGGATAAAGGCCGCCCTTCTCCATGACGAAGTGAGCTTAATTGAAAAGAAGCTTTTTAAAAAGAAATACAGTGAAACAAAAAAGAACTCAAGATCCAGGAGAAGATAG

Related Sequences

XP_004870031.1 Protein

Taf1b PREDICTED: TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X5 [Heterocephalus glaber]

Length: 593 aa      View alignments
>XP_004870031.1
MELEEAKELKERCSQCDAISWGLTEEGKYYCTSCHNVTERSKEVINTDIIPNTKIKSISRGLKRKSKLEKGWDWYVCEGFQHILCQQAEVLKTLGVAPELKNEVLHNFWKRYLQKSKQAYCANPVYTSGRKAQVLKDNVHHSDWASGSELLSDASCASSLESGAESKSDVPTPKPFPALRTPQSESRSVPAVAASVCSGSLDGMEYSEWKEKGILKMTVPGTLALCYLSLLWQREAVTLSDLLRFVEEDHIPYIKAFQSFPEEMKLYGRDKGIFAIESWPDYEEIYKHMFEIATFLDLPRFPDITEDCFLHPNILCVKYLMEANLPDEMHGLTHQVTKMTGLGDVDSLTFDPIAKGAQTVKYDVQAIALIVVVLKLLFLLDDNLEWSLSDLAEVNNEKNKTDKPWFSFRKWYQVMKKSVDEKKQNWEEARAKYLWKSEKPLYHSHIDKPGASKRREMVVNLQKQFSTLADSAPTIEKKSPSSFQFHWAEDDPSRPCFHGHSLQGILVKKGPALVTKNSLYWLSTQKFCRSYCKHVTTYEESNFSLSYQFILNLFSFLLRIKAALLHDEVSLIEKKLFKKKYSETKKNSRSRRR