Details from NCBI annotation

Gene Symbol Patl1
Gene Name protein associated with topoisomerase II homolog 1 (yeast)
Entrez Gene ID 101707355

Database interlinks

Part of NW_004624864.1 (Scaffold)

For more information consult the page for NW_004624864.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PATL1 ENSCPOG00000006827 (Guinea pig)

Gene Details

protein associated with topoisomerase II homolog 1 (yeast)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006154, Guinea pig)

Protein Percentage 90.91%
CDS Percentage 86.88%
Ka/Ks Ratio 0.09426 (Ka = 0.0486, Ks = 0.5157)

PATL1 ENSG00000166889 (Human)

Gene Details

protein associated with topoisomerase II homolog 1 (yeast)

External Links

Gene Match (Ensembl Protein ID: ENSP00000300146, Human)

Protein Percentage 92.86%
CDS Percentage 87.14%
Ka/Ks Ratio 0.07641 (Ka = 0.0375, Ks = 0.4903)

Patl1 ENSMUSG00000046139 (Mouse)

Gene Details

protein associated with topoisomerase II homolog 1 (yeast)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000060398, Mouse)

Protein Percentage 92.34%
CDS Percentage 86.1%
Ka/Ks Ratio 0.07202 (Ka = 0.0407, Ks = 0.5658)

Patl1 ENSRNOG00000021052 (Rat)

Gene Details

protein associated with topoisomerase II homolog 1 (yeast) (Patl1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000059542, Rat)

Protein Percentage 92.21%
CDS Percentage 86.15%
Ka/Ks Ratio 0.07879 (Ka = 0.043, Ks = 0.5454)

Genome Location

Sequence Coding sequence

Length: 2313 bp    Location: 1136941..1161414   Strand: +
>XM_004869722.1
ATGTTCCGCTACGAGTCTTTGGAGGATTGTCCTCTAGATGAAGATGAAGATGCATTTCAGGGCCTTGGAGAAGAAGATGAGGAGATTGATCAGTTCAACGATGATACATTTGGGTCAGGTGCAATTGACGATGACTGGCAGGAAGCGCACGAGCGCCTGGCCGAGTTGGAAGAGAAGCTACCGGCGGCAGCTAATGAGCAAGCAGGCAATGGGGAGAGGGACGAGATGGACCTGCTCGGTGACCACGAGGAGAATCTGGCTGAAAGGCTCAGCAAGATGGTGATTGAGAATGAGCTAGAAGATCCAGCTATCATGAGAGCAGTGCAGACCAGGCCAGTTTTGCAACCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCCGAAGTTCTGAGGCGAATCCGAGGCCCACTACTTGCTCAGGAAATGCCTACAGTGTCTGTGCTAGAATATGCCTTGCCGCAGAGGCCCCCGCAGGGCCCAGAGGACGATCGGGATCTCTCTGAGCGCGCCCTGCCGCGGAGGTCAACTTCACCTGTCATCGGGAGCCCCCCCGTGAGGGCTGTGCCCATAGGCACCCCACCTAAGCAGATGGCCATACCCAGCTTTAGCCAGCAGATTCTGTGTCCGAAGCCTGTGCATGTCCGGCCCCCGATGCCACCACGTTATCCTGCTCCCTATGGCGAGAGGATGTCTCCAAACCAGCTCTGCAGTGTCCCGAACTCTTCCCTCCTGGGTCACCCGTTTGCTCCCAGCGTCCCTCCGGTCCTCAGCCCCCTCCAGAGAGCACAGCTTCTTGGAGGCGCTCAGCTGCAGCCTGGACGGATGTCTCCCAGCCAGTTTGCACGAGTTCCTGGGTTCGTTGGGAGCCCCCTTGCTGCCGTGAACCCCAAGCTGCTGCAAGGGCGAGTTGGGCAGATGCTCCCCCCGGCCCCCGGCTTCCGTGCCTTCTTCAGTGGCCCGCCCCCCACCACACCGCCTTCGCAGCCACGCCCTCCCGGCCCAGGGCCACCTCTGCAAACCCTACGGTCTCAGGCCCCAATGTTTAGAGCAGACACAACTCACCTTCACCCCCAGCACCGGCGACTCCTGCATCAGCGACAGCAGCAGAGCCGGAATCAGCATCGGAGCCTCAATGGTGCTGGAGACAGAGGAAGTCACCGATGCAGTCAGCAGGATCACCTCCGGAAGGACCCCTACGCCAACCTCATGTTGCAGCGGGAAAAGGATTGGGTCTCTAAAATCCAGATGATGCAGCTGCAGAGCACTGACCCCTACCTGGATGATTTTTATTACCAGAATTACTTTGAGAAACTGGAGAAACTGTCAGCTGCTGAAGAAATGCAAGGTGATGGCCCTAAAAAGGAGCGCACCAAGCTCATCACCCCGCAGGTGGCCAAGCTGGAGCAGGCCTACAAGCCAGTGCAGTTTGAGGGCTCACTGGGAAAGCTCACTGTCTCCAGTGTGAATAACCCTCGAAAAATGATCGATGCGGTGGTGCCGTCGCGGGGTGAGGACGATGAGACAAAAGAAAAACAAGTTCGAGACAAGAGAAGAAAAACACTTGTCATAATTGAGAAAACCTACAGCTTGCTCCTGGACGTGGAGGACTACGAACGGCGTTACCTCCTGAGCCTGGAAGAGGAACGGCCTGCCCTGCTGGACGAGAGAAAGCACAAAGTCTGTGGCATGTACGACAACTTGCGGGCCAAGCTGCCCGGGCAAGACAGGCCGAGTGACGACCACTTCGTGCAGATCATGTGCATCCGGAAAGGGAAGAGAATGGTCGCCCGCATCCTCCCCTTCCTCTCCACAGAGCAGGCAGCTGACATTCTCCTGACGACTGCTAGGAACCTCCCTTTCCTTATCAAGAAGGACTCCCAAGATGAGGTCCTGCCGTGCTTACTGCGTCCCTTCTCCGTGCTCCTCTATCACCTTCCACCGGTGACGGTCACAGGCCTCCTGCAGCAGCTGATGAACCTACCTCAGAGTGCAGCCGCGCCAGCGCCCTGCAATCCTCACCTCACCGCTGTGCTCCAGAACAAGTTCGGCCTCTCGCTGCTCTTCACCCTCCTGAGCCGAGTTGAAGATCTGCAGAGCTCGGAGCCTCTGACAGAGTCCTCGCAGAGTGCCCAGTGGACAGAGGTGATGTTTATGGCCACCCGAGAACTTCTACGGATTCCCCAAGCAGCCTTGGCCAAGCCCGTCTCTATACCCACAAACCTAGTGTCCCTTTTTTCTCGCTACGTTGACCAGCAGAAACTGAACTTGCTGGAGACAAAGCTGCAGCTGGTTCAGGGGATCCGATGA

Related Sequences

XP_004869779.1 Protein

Patl1 PREDICTED: protein PAT1 homolog 1 [Heterocephalus glaber]

Length: 770 aa      View alignments
>XP_004869779.1
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAIDDDWQEAHERLAELEEKLPAAANEQAGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGSLNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSPVIGSPPVRAVPIGTPPKQMAIPSFSQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSVPNSSLLGHPFAPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAVNPKLLQGRVGQMLPPAPGFRAFFSGPPPTTPPSQPRPPGPGPPLQTLRSQAPMFRADTTHLHPQHRRLLHQRQQQSRNQHRSLNGAGDRGSHRCSQQDHLRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQNYFEKLEKLSAAEEMQGDGPKKERTKLITPQVAKLEQAYKPVQFEGSLGKLTVSSVNNPRKMIDAVVPSRGEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYERRYLLSLEEERPALLDERKHKVCGMYDNLRAKLPGQDRPSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILLTTARNLPFLIKKDSQDEVLPCLLRPFSVLLYHLPPVTVTGLLQQLMNLPQSAAAPAPCNPHLTAVLQNKFGLSLLFTLLSRVEDLQSSEPLTESSQSAQWTEVMFMATRELLRIPQAALAKPVSIPTNLVSLFSRYVDQQKLNLLETKLQLVQGIR