Sequence details NCBI ID: XM_004869608.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Mysm1
Gene Name Myb-like, SWIRM and MPN domains 1, transcript variant X1
Entrez Gene ID 101722778

Database interlinks

Part of NW_004624862.1 (Scaffold)

For more information consult the page for NW_004624862.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

MYSM1 ENSCPOG00000006557 (Guinea pig)

Gene Details

Myb-like, SWIRM and MPN domains 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005904, Guinea pig)

Protein Percentage 84.7%
CDS Percentage 88.45%
Ka/Ks Ratio 0.31548 (Ka = 0.0874, Ks = 0.2771)

MYSM1 ENSG00000162601 (Human)

Gene Details

Myb-like, SWIRM and MPN domains 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000418734, Human)

Protein Percentage 82.4%
CDS Percentage 87.49%
Ka/Ks Ratio 0.33956 (Ka = 0.1005, Ks = 0.2959)

Mysm1 ENSMUSG00000062627 (Mouse)

Gene Details

myb-like, SWIRM and MPN domains 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000075269, Mouse)

Protein Percentage 76.78%
CDS Percentage 82.51%
Ka/Ks Ratio 0.28962 (Ka = 0.1417, Ks = 0.4892)

Mysm1 ENSRNOG00000026299 (Rat)

Gene Details

Protein Mysm1

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000030043, Rat)

Protein Percentage 75.83%
CDS Percentage 81.63%
Ka/Ks Ratio 0.29238 (Ka = 0.1512, Ks = 0.5171)

Genome Location

Sequence Coding sequence

Length: 2466 bp    Location: 1615588..1666438   Strand: +
Raw sequence   
>XM_004869608.1
ATGGCGGCCGAAGAGACGGATGTGGATGTTGAAGGGGATGTGGTGGCGTCGGGCGCACAGCCAGGAAGTGATGAAAGTACAGCATCAGTTTTACAACAAGAACACTATCTTGATTCATCGTGGAAAAATGCGAATGGCCTTATTCCTTGGACTCTAGATAGCACCATCAGTGAAGAGAACAGAGCTGTCATTGAGAAAATGTTATTGGAAGAACAGTATTACTTATCTAAAAAATCTCTTCCGGGAAAATTCTGGCTTGATCGAAAAGAAGATAATAAAAAACACATGAACAGCTTCCTTACTTTTTCATCTGGTGCACTGGTACAATCTCCTACAAAACCAGCCAGTTACTCAGTAAAGTGGACGATAGAAGAAAAAGAGCTGTTTGAACAAGGGCTGACTAAATTTGGTCGAAGATGGACCAAAATTGCAAAGCTCATTGGAAGTCGCACTGTTTTACAAGTGAGGAGTTATGCCAGGCAATACTTTAAAAATAAGGTAAAATGGGGTCCTGAGAAAGAAACACGAAATGAGAAGAGCAGCAGTGATCTTCAGGTTGAAAATGATGATAAAGGGACAGCAGCCCAGACGCCATCATGTTTAAGGGCACGTATTGATCCTAACTTGAATGCTGTAAGGATTGAAAAGTTATCTGATGATGAAGAAGTAGACATCACAGATGAGGTAGATGAGTTGATTTCTCAAACACCACAAAAGAATCCTAACAGTAGTCTCTCATCTGACAGTCCTAATAGTAAAATATGTGAAACCAGTCGCAGAGCATGCATACCCGAGGAAAGTCCCTTTTCCGAATCTTCCAGGGAGCATCTTCACAATATAAAGCAAGACGAAATGGAAACACATTCAAGCTCAGAAAATACAGTGTGGACTGAAAAACAAGGCAACGGTGGCAAAAACCCAGTTGAGTTAAATGATCAGAAACATAATAAACTGCATGCTGGAAACATAATAATAGATGACGCTGGACGGTGGCCTTCTTCAGAGCCTTGTGAAATTCAGAAAGGTGCAAGTGATAGTGAAGTGCTTTTTCATTCTTGCCAAGTGGTGGAGGAGAGCCATGAGGAAGAAGAGCTTAAGCCACCAGAACAAGAAGTAGAAATAGATAGAAATGTTGTTCAAGAAGAAGAAAAACAAGCAATTCCTGAGTTTTTTGAGGGGCGCCAAACTAAGACACCAGAGCGCTATTTGAAAATTAGAAATTACATTTTGGATCAATGGAAGATATGCAAACCAAAATACTTAAATAAGACCTCAGTACGCCCTGGCCTGAAGAACTGTGGGGATGTTAATTGCATTGGACGGATTCATACATACCTGGAGTTGATAGGAGCAATCAACTTTGGATGTGAACAGGCTGTGTATAACAGGCCACAACCCATTGATAAAATTCGAGTCAGAAATAAAAGAGACTCTGTAGAAGCATACCAGCTGGCACAGCACCTGCAATCCATGCGCACTAGGAGGCGGAGAGTCCGAGACCCATGGGGAAACTGGTGTGATGCAAAGGATTTAGAAGGACAGACTTTTGAGCATCTCTCTGCCGAGGAGTTGGCAAAAAGAAGAGAAGAGGAAAACAGCAAACCTGCCAAATCTTCTAAAGTGTCAAGATTAGCAAAAAGCTCATTTGATCCCTTCCAACTGATAACTTGTAGTACTTTCAGTGGAGAAAAACAGGAGCCATTTCAGGTGAAAGTGGCTTCAGAAGCACTTTTAATAATGGATTTGCATGCTCATGTTTCTATGGCAGAAGTAATTGGTCTGTTAGGAGGAAGATACTCAGAAGTTGGTAAGATAGTGGAAGTCTGTGCAGCAGAGCCATGTAACAGTCTCAGTACAGGACTGCAGTGTGAGATGGATCCTGTATCACAAACACAGGCCTCAGAAACCTTGGCTGTTAGAGGATACAGTGTGATTGGATGGTATCATTCTCATCCTGCATTTGATCCTAATCCTTCCTTACGAGATATTGACACACAGGCCAAATACCAGAGTTACTTCTCAAGAAGAGGTGCAAAGTTCATTGGGATGATTATTAGTCCCTATAATCGAAACAATCCTTTGCCGTATTCTCAGATTACCTGCCTGGTCATCAGTGAGGAAATCAGCTCAAATGGCTCCTATCGTTTACCTTACAAATTTGAAGTGCAGCAGATGTTAGAAGAACCTCAGTGGGGATTAGTGTTTGAAAAGACAAGATGGATGATAGAAAAATATAGGCTCTCCCGTAGCAGTGTCCCCATGGATCAAATGTTTCGCCAGGATTCCGACCTGACTTGTTTACAGAAGCTTTTGGAGTGTCTGAGGAAAACTCTGACCAAAGTAACCAGTCGCTTCATTGCTGAGGAATTTTTGACTCGAATAGAAAATTTGTTCCTTTCCAGTTACAAAAGCAAGCAAGAGGACAGAGTGGCTGAAGAGAACTGTACAAAGGAATTGTTAGTCTAA

Related Sequences

XP_004869665.1 Protein

Mysm1 PREDICTED: histone H2A deubiquitinase MYSM1 isoform X1 [Heterocephalus glaber]

Length: 821 aa      View alignments
>XP_004869665.1
MAAEETDVDVEGDVVASGAQPGSDESTASVLQQEHYLDSSWKNANGLIPWTLDSTISEENRAVIEKMLLEEQYYLSKKSLPGKFWLDRKEDNKKHMNSFLTFSSGALVQSPTKPASYSVKWTIEEKELFEQGLTKFGRRWTKIAKLIGSRTVLQVRSYARQYFKNKVKWGPEKETRNEKSSSDLQVENDDKGTAAQTPSCLRARIDPNLNAVRIEKLSDDEEVDITDEVDELISQTPQKNPNSSLSSDSPNSKICETSRRACIPEESPFSESSREHLHNIKQDEMETHSSSENTVWTEKQGNGGKNPVELNDQKHNKLHAGNIIIDDAGRWPSSEPCEIQKGASDSEVLFHSCQVVEESHEEEELKPPEQEVEIDRNVVQEEEKQAIPEFFEGRQTKTPERYLKIRNYILDQWKICKPKYLNKTSVRPGLKNCGDVNCIGRIHTYLELIGAINFGCEQAVYNRPQPIDKIRVRNKRDSVEAYQLAQHLQSMRTRRRRVRDPWGNWCDAKDLEGQTFEHLSAEELAKRREEENSKPAKSSKVSRLAKSSFDPFQLITCSTFSGEKQEPFQVKVASEALLIMDLHAHVSMAEVIGLLGGRYSEVGKIVEVCAAEPCNSLSTGLQCEMDPVSQTQASETLAVRGYSVIGWYHSHPAFDPNPSLRDIDTQAKYQSYFSRRGAKFIGMIISPYNRNNPLPYSQITCLVISEEISSNGSYRLPYKFEVQQMLEEPQWGLVFEKTRWMIEKYRLSRSSVPMDQMFRQDSDLTCLQKLLECLRKTLTKVTSRFIAEEFLTRIENLFLSSYKSKQEDRVAEENCTKELLV