Sequence details NCBI ID: XM_004869588.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Mcph1
Gene Name microcephalin 1, transcript variant X2
Entrez Gene ID 101711665

Database interlinks

Part of NW_004624861.1 (Scaffold)

For more information consult the page for NW_004624861.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

MCPH1 ENSCPOG00000015508 (Guinea pig)

Gene Details

microcephalin 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013985, Guinea pig)

Protein Percentage 69.44%
CDS Percentage 79.54%
Ka/Ks Ratio 0.57665 (Ka = 0.2093, Ks = 0.363)

MCPH1 ENSG00000147316 (Human)

Gene Details

microcephalin 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000342924, Human)

Protein Percentage 56.69%
CDS Percentage 67.69%
Ka/Ks Ratio 0.44373 (Ka = 0.3497, Ks = 0.7881)

Mcph1 ENSMUSG00000039842 (Mouse)

Gene Details

microcephaly, primary autosomal recessive 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000037000, Mouse)

Protein Percentage 51.88%
CDS Percentage 63.94%
Ka/Ks Ratio 0.44773 (Ka = 0.407, Ks = 0.9091)

Mcph1 ENSRNOG00000028586 (Rat)

Gene Details

Protein Mcph1

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000046380, Rat)

Protein Percentage 51.58%
CDS Percentage 63.97%
Ka/Ks Ratio 0.45582 (Ka = 0.4104, Ks = 0.9003)

Genome Location

Sequence Coding sequence

Length: 2475 bp    Location: 4373742..4556933   Strand: +
Raw sequence   
>XM_004869588.1
ATGGCGGCCCCCGCGCCCGCGGTACTGAAAGATGTAGTGGCCTATGTTGAAGTGTGGTCTTCCAATGGGACAGAAAATTATTCAAAGACATTTACAAACCAGCTTGTGGAAATGGGGGCAAAGGTTTCAAAAACTTTTAACAAACAAGTTACTCACGTTGTCTTCAAAGATGGCTACCAGAGCACGTGGGACAAGGCCCGGAAGAGGGGGACAAAGCTTGTTTCAGTGCTCTGGGTTGAAAAGTGCAGGACAGCTGGTGTGCATGCTGACGAGGCCTTATTCCCCGCAACTAACCCCAGTGAGCACACAGTGAGCCTGATGAGGAAAAGGCGTAAGTGCATGCAACCCAAAGATTTTATTCCTAAAACACCAGAAAATGATAAAAGACTTCAAAGGAAATTTGAGAAAATGACTGAAGAGCTTCAGAGACAAAAGACAACCCTAGATGACAGCATGCCTGTTTTCTTATTTGAATCTCATGGCTCATTGACGTCTAGTTCCTCAGTTAAAATTAGTCACCACCAGGCAATGGAGCAGAGGTTACAGGAGATGAAGGAGAAGAGGGAACAGCTTTCCCCTACCTCTTCCCAGAGGACTGAGCAGGCTCACAGAAGCCCCAGCGACTCTCTGTGTGAGGCGTCTTTGGACATTTCCCGGGATACTGTGTGTGCAGATGAATCCTTTGCTGGTGGTTTGTACTCATCTTTGGGTGATCTCTGTGGAAGATCAGGATGTGGAAATCAGGACAGGAAATTGGGAGATTCTGTTAAGGAAATTAAAAGTGACACGTGCAGCTCCTCCCCTGTACTGAAAACCAGTAATATTCATCCACTGGCATCATCCAGCTGCCTCAGCGAGTTAAGTCCCCAGAAATGCGCGAGCGATCTTCCAAAGGCAGAGGTCGGTCGGCTGAGAGACCTAGGTGGTGAAACTGTCACGCCAGACAGAAGACAGGCCCAAGGGGTATCTGACCTGCATGAGGTGAAAAGCAGTCCTCCTGCAACATCTGCAGCCAGAGGGCATCTCTGGCTGCATTCAGTGCCCGGGAGCTCCTCAGCAAAGGGAAAAAGGACATCCGTGGACCTGTGTTCACCTCCAAGGTCAACACTGAAGAGGAGGAGGAGCGGCCAGAGGCCTGTGGGCCCCTGGGAGCAGCAGCTTAGATCTAGCAGAAGCCTGCGGTTCCCCACCTCAGCCGTCATGGGCACTCCTGACTGTGGGGTGTCCTCTTATGAGGATTACTTCTCCCCCGAGAACCTCCAGGAGAGGACCTCAGCGGGCCACCCTCCTGTGTCTCGGCCATCGCCAGGCCCTGCTCACTTCAGCTGCAGAAGTCTTTCCAAGAGGGAGAGAGCGAGCATCCTAGAAATGTCTGACCTCTCCTGCATTGGGGAAAAATCCACACTGGTCAGTATCACCGATTTGACAGCAAAAACTACCTCCAGCCTCCAGAGCCCTGCGTGCCTGGCTGCGGAGGACACACCTGCTGCTGAGGAAAGCCCAGGATGCCGCGGTCGGGCTGGGAGTCCCCAGGGAGACGATGCAGGCCCCACAGGAAGTCACCATCCCCACAACACCCACGACCCTGCCGGTCCAGGGCAGGAGAGCAGCTGCTCCCCCGTGCAGGGCAGGAGAGCAGAGAGAGAACTAGTTGGCGGGAGAGGCACCCAGAAAGAGGGCCCTGAAGCTGCAGTGCCCAACTCCCCTGGGAGGCACACACAGAAGGAGTTCGAGCTGCACTTTGGAGGTGACCCTCATGAGGAGCAATCTGCAGAGGAAGAAAAAGAAAACCTAGCCCTGGGATACAGTGGATATGTTAAAAATGGACCAGCAAGGCACGACGTTTCATACAGCTCACAGGAAGGTGTTCAGGACCTCGTCAGACCCCACGAGGAGTCAGAGAAAAGCAGGAAAAGCAAAAAGCTTCAGCCAACAAGAACATTAGTCATGACAAGCATGCCATCGGAGAAGCAGAGCGTCGTCATCCAGGTGGTGGACACCCTGAAAGGCTTTTCCTTGGCGCCGGAAGTGTGCGAGACCACGACGCACGTGCTGGCCGGGAAGCCGCTGCGCACGCTGAATGTGCTGCTGGGGATCGGGCGCGGCTGCTGGGTGCTGTCTTATGAGTGGGTGCTCTGGTCTTTGGAGCTGGGTCACTGGATTTCTGAGGAACCTTTTGAACTCTCTACCTACTTCCCGGCAGCTCCTATTCCGTCATGCAGCACAGGGTCTGTGCCTTTGAAAGCTACCTGCTTCGAGGGAGCGCCGTGGCCAGCACTCCGGGCTCGGAGCCTGGAAAGGAGGCACTGGCCCAGGATGACTGCGGCCACAGCTCGGCCTGAGCAGCTGCAGCCTCCGAACCCTCTGCGCACAGACTCTGGACGTCAGGCTCTTTCCCCGGGATGCTGCTGTCTGAACCTCAGTCCTGATCACAGGCCTTTGTCATTTGTCATTACACACTCTATTCCCAAATAA

Related Sequences

XP_004869645.1 Protein

Mcph1 PREDICTED: microcephalin isoform X2 [Heterocephalus glaber]

Length: 824 aa      View alignments
>XP_004869645.1
MAAPAPAVLKDVVAYVEVWSSNGTENYSKTFTNQLVEMGAKVSKTFNKQVTHVVFKDGYQSTWDKARKRGTKLVSVLWVEKCRTAGVHADEALFPATNPSEHTVSLMRKRRKCMQPKDFIPKTPENDKRLQRKFEKMTEELQRQKTTLDDSMPVFLFESHGSLTSSSSVKISHHQAMEQRLQEMKEKREQLSPTSSQRTEQAHRSPSDSLCEASLDISRDTVCADESFAGGLYSSLGDLCGRSGCGNQDRKLGDSVKEIKSDTCSSSPVLKTSNIHPLASSSCLSELSPQKCASDLPKAEVGRLRDLGGETVTPDRRQAQGVSDLHEVKSSPPATSAARGHLWLHSVPGSSSAKGKRTSVDLCSPPRSTLKRRRSGQRPVGPWEQQLRSSRSLRFPTSAVMGTPDCGVSSYEDYFSPENLQERTSAGHPPVSRPSPGPAHFSCRSLSKRERASILEMSDLSCIGEKSTLVSITDLTAKTTSSLQSPACLAAEDTPAAEESPGCRGRAGSPQGDDAGPTGSHHPHNTHDPAGPGQESSCSPVQGRRAERELVGGRGTQKEGPEAAVPNSPGRHTQKEFELHFGGDPHEEQSAEEEKENLALGYSGYVKNGPARHDVSYSSQEGVQDLVRPHEESEKSRKSKKLQPTRTLVMTSMPSEKQSVVIQVVDTLKGFSLAPEVCETTTHVLAGKPLRTLNVLLGIGRGCWVLSYEWVLWSLELGHWISEEPFELSTYFPAAPIPSCSTGSVPLKATCFEGAPWPALRARSLERRHWPRMTAATARPEQLQPPNPLRTDSGRQALSPGCCCLNLSPDHRPLSFVITHSIPK