Sequence details NCBI ID: XM_004869511.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Phc1
Gene Name polyhomeotic homolog 1 (Drosophila), transcript variant X5
Entrez Gene ID 101705028

Database interlinks

Part of NW_004624860.1 (Scaffold)

For more information consult the page for NW_004624860.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PHC1 ENSCPOG00000007323 (Guinea pig)

Gene Details

polyhomeotic homolog 1 (Drosophila)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006601, Guinea pig)

Protein Percentage 94.22%
CDS Percentage 91.26%
Ka/Ks Ratio 0.10928 (Ka = 0.0309, Ks = 0.2829)

PHC1 ENSG00000111752 (Human)

Gene Details

polyhomeotic homolog 1 (Drosophila)

External Links

Gene Match (Ensembl Protein ID: ENSP00000440674, Human)

Protein Percentage 91.45%
CDS Percentage 87.79%
Ka/Ks Ratio 0.10194 (Ka = 0.0451, Ks = 0.4426)

Phc1 ENSMUSG00000040669 (Mouse)

Gene Details

polyhomeotic-like 1 (Drosophila)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000125580, Mouse)

Protein Percentage 90.81%
CDS Percentage 86.06%
Ka/Ks Ratio 0.08815 (Ka = 0.049, Ks = 0.5559)

Phc1 ENSRNOG00000015191 (Rat)

Gene Details

polyhomeotic homolog 1 (Drosophila) (Phc1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000020529, Rat)

Protein Percentage 89.91%
CDS Percentage 85.41%
Ka/Ks Ratio 0.10066 (Ka = 0.0574, Ks = 0.5701)

Genome Location

Sequence Coding sequence

Length: 2976 bp    Location: 4739709..4720688   Strand: -
Raw sequence   
>XM_004869511.1
ATGAAGTCTGGGAGAAGGTGTAATTCTAACCCGTTCTGCTTCTGCCTAGGTCTTGAGTCGGAGCACCAGCCGTGGGGACCCTGGAGTGGTGTCATGGAGACTGAGAGTGAGCAGAACTCCAGCTCCACCAATGGGAGTTCCAGCTCTGGGGCCAGCTCTCGGCCCCAGATTGCACAGATGTCCCTGTACGAGCGGCAGGCCGTCCAGGCTTTGCAGGCGCTGCAGCGGCAGCCCAATGCGGCTCAGTATTTCCACCAGTTCATGCTACAGCAGCAGCTCAGCAATGCCCAGCTGCACAGCCTGGCTGCGGTCCAGCAGGCCACGATTGCTGCCAGTCGGCAGGCCAGCCCTCCCAACACCAGCACTGCGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGGCGACCACCACCCAGGCCTCAATCAATCTGGCCACCACCTCGGCCGCCCAGCTCATCAGCCGTTCCCAGAGTGTGAACTCTCCCAGCGCCACCACCTTGACCCAGTCTGTGCTGCTGGGGAACACTACCTCCCCACCGCTCAACCAGTCCCAGGCCCAGATGTATCTGCGGGTGCAGAACTTGGCAGTGAGGAACCAACAGGCCTCTGCTCAAGGAGCCCCGATGCCAGGCTCCTCCCAGAAGGCCATTCCTCCAGGAGCCTCTCCCATCTCTGGCCTTTCCCAGACCTCGAACCAGGCGCTCGCTGTGGCACAGGCTTCTTCGGGTGCCTCCGGCCAGTCCCTCAACCTCAGTCAGGCTGGTGGAAGCAGTGGGAGTAGCCTCGCAGGGTCCCTGGGTCCAGGTGGAGGTGGCCAGGCCCCTGGGGGTTTGGGTCAGTTGCCTTCCTCAGCCATGGGCGGAGCAGGCTGTCCCAGGAAGGGCACAGGAGTAGCCCCGCCCCTGCCAGCAGCCCAGACAGTGACTGTGAGCCAGGGCAGCCAGACAGAGGTGGAAAGCGCAGCGGCCAAAAAGGCGGATGCGGACGGGAGTGGTCAGAGCGTGGGCATGAACCTGACGAGGACGGCCACCCCTGCCCCCAGCCAGACGCTCATCAGCTCAGCCACATACACACAGATCCAGCCCCACTCGCTGATCCAGCAGCAGCAGCAGATCCACCTCCAGCAGAAGCAGGTGGTGATCCAGCAGCAGATTGCCATCCACCACCAGCAGCAGTTCCAGCACCGTCAGTCCCAGCTGCTGCACACAGCCACACACCTCCAGTTGGCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAAGCCACAACCCTCACTGCCCCTCAGCCACCACAGGTCCCCCCTACTCAGCAGGTCCCACCTTCCCAGTCCCAGCAGCAAGCCCAGACGCTTGTGGTTCAACCCATGCTTCAGTCTTCACCGCTGTCTCTTCCACCGGACCCAACCCCCAAGCCGCCCATCCCCATCCAGTCCAAGCCACCCGTAGCACCTATCAAACCTCCTCAGTTAGGGGCTACGAAGATGTCCGCTACCCAGCAGCCGCCACCCCATATCCCTGTGCAAGTGGTGGGTACCCGGCAGCCAGGTACGGCCCAGGCGCAGGCTCTGGGCTTGGCACAGCTGGCAGCTGCTGCCCCTGCTTCCCGGGGGATGCCAAGTCCAGTGCAGCCGGGCCAGGGCCACCTGGCCTCCTCCTCGCCTTCGTCTCAGGCTCCCGGTGCACTGCAGGAATGTCCTCCTCTGTTGGCCCCTGGGATGACCCTTGCTCCTGTGCAGGGGACAGCACATGTGGTAAAGGGTGCGGCCACCACATCTTCACCTGTGGTTGCCCAGGTCCCTGCTGCCTTCTACATGCAGTCTGTACACCTGCCGGGTAAGCCCCAGACGCTGGCTGTGAAACGCAAAGCTGAGTCTGAGGAGGAGAGAGATGAGGTCTCCACCTTGGCTTCAGTGCTTCCTGCCAAGGCGTCTCCTGCCGCAGAGAGCCCAAAGGTCGTGGAGGAGAAGAGAAGTTTTGCGGAGAAAGCTGACCCAGGGACCAGTGTGAATGCCAGCGCCCCCAGCAGTGAGCTCATAGCCCTGGCCCCGGCCCCAGGAGCCCCACCTCCATCACTGGCCATGGTGTCCAGACAGGTGGGAGACTCGAAACCCCCGCAGGCCATTGTGAAGCCTCAGATTCTCACGCACATCATCGAGGGCTTCGTCATCCAGGAAGGAGCAGAACCTTTCCCGGTGGGTTGCTCTCAGTTACTAAAGGAGTCTGAGAAGCCACTACAGACTGGCCTCCCAGCGGGGCTGAGTGAAAGTCAGTCAAGTGGCCCCCTGGGAGGGGACAGTCCTTCTGGCGATTTGGATAAGGCGGCAAACCTCCTGAAATGCGAGTACTGTGGGAAGTACGCCCCTGCAGAGCAGTTCCGAGGCTCTAAGAGGTTCTGCTCCATGACTTGTGCTAAGAGGTACAATGTGAGCTGCAGCCACCAGTTCCGGCTCAAGAGAAAAAAAATGAAAGAGTTCCAAGAAGCCAACTATGCTCGAGTTCGTAGGCGTGGACCCCGCCGCAGCTCCTCTGACATCGCCCGAGCCAAGATCCAGGGCAAGCGGCACCGGGGCCAAGAGGACTCCAGCCGGGGTTCAGATAATTCCAGCTATGACGAAGCACTGTCCCCTACGTCTCCTGGGCCATTGTCAGGACGAGCTGGGCAGGGAGATCGTGACCTGGGGAACACCATTACCGCACCCCCGACACCTGAATTACACGGCATAAACCCTGTGTTCCTGTCCAGTAACCCAAGCCGTTGGAGTGTAGAGGAGGTGTACGAGTTCATTGCTTCTCTCCAAGGCTGCCAAGAGATCGCAGAGGAGTTCCGTTCCCAGGAGATTGATGGACAGGCCCTTTTATTACTTAAAGAAGAACATCTTATGAGTGCCATGAACATCAAACTGGGCCCTGCCCTTAAGATCTGCGCCAAGATAAATGTCCTCAAGGAGACCTAA

Related Sequences

XP_004869568.1 Protein

Phc1 PREDICTED: polyhomeotic-like protein 1 isoform X5 [Heterocephalus glaber]

Length: 991 aa      View alignments
>XP_004869568.1
MKSGRRCNSNPFCFCLGLESEHQPWGPWSGVMETESEQNSSSTNGSSSSGASSRPQIAQMSLYERQAVQALQALQRQPNAAQYFHQFMLQQQLSNAQLHSLAAVQQATIAASRQASPPNTSTAPQQQQQQQQQQQQQPQATTTQASINLATTSAAQLISRSQSVNSPSATTLTQSVLLGNTTSPPLNQSQAQMYLRVQNLAVRNQQASAQGAPMPGSSQKAIPPGASPISGLSQTSNQALAVAQASSGASGQSLNLSQAGGSSGSSLAGSLGPGGGGQAPGGLGQLPSSAMGGAGCPRKGTGVAPPLPAAQTVTVSQGSQTEVESAAAKKADADGSGQSVGMNLTRTATPAPSQTLISSATYTQIQPHSLIQQQQQIHLQQKQVVIQQQIAIHHQQQFQHRQSQLLHTATHLQLAQQQQQQQQQQQQQATTLTAPQPPQVPPTQQVPPSQSQQQAQTLVVQPMLQSSPLSLPPDPTPKPPIPIQSKPPVAPIKPPQLGATKMSATQQPPPHIPVQVVGTRQPGTAQAQALGLAQLAAAAPASRGMPSPVQPGQGHLASSSPSSQAPGALQECPPLLAPGMTLAPVQGTAHVVKGAATTSSPVVAQVPAAFYMQSVHLPGKPQTLAVKRKAESEEERDEVSTLASVLPAKASPAAESPKVVEEKRSFAEKADPGTSVNASAPSSELIALAPAPGAPPPSLAMVSRQVGDSKPPQAIVKPQILTHIIEGFVIQEGAEPFPVGCSQLLKESEKPLQTGLPAGLSESQSSGPLGGDSPSGDLDKAANLLKCEYCGKYAPAEQFRGSKRFCSMTCAKRYNVSCSHQFRLKRKKMKEFQEANYARVRRRGPRRSSSDIARAKIQGKRHRGQEDSSRGSDNSSYDEALSPTSPGPLSGRAGQGDRDLGNTITAPPTPELHGINPVFLSSNPSRWSVEEVYEFIASLQGCQEIAEEFRSQEIDGQALLLLKEEHLMSAMNIKLGPALKICAKINVLKET