Sequence details NCBI ID: XM_004869456.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Usp5
Gene Name ubiquitin specific peptidase 5 (isopeptidase T), transcript variant X1
Entrez Gene ID 101720419

Database interlinks

Part of NW_004624860.1 (Scaffold)

For more information consult the page for NW_004624860.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

USP5 ENSCPOG00000012336 (Guinea pig)

Gene Details

ubiquitin specific peptidase 5 (isopeptidase T)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011099, Guinea pig)

Protein Percentage 99.04%
CDS Percentage 94.41%
Ka/Ks Ratio 0.01599 (Ka = 0.0043, Ks = 0.2683)

USP5 ENSG00000111667 (Human)

Gene Details

ubiquitin specific peptidase 5 (isopeptidase T)

External Links

Gene Match (Ensembl Protein ID: ENSP00000229268, Human)

Protein Percentage 98.48%
CDS Percentage 92.62%
Ka/Ks Ratio 0.01992 (Ka = 0.0081, Ks = 0.4084)

Usp5 ENSMUSG00000038429 (Mouse)

Gene Details

ubiquitin specific peptidase 5 (isopeptidase T)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000041299, Mouse)

Protein Percentage 98.6%
CDS Percentage 90.79%
Ka/Ks Ratio 0.01111 (Ka = 0.0062, Ks = 0.5548)

Usp5 ENSRNOG00000015409 (Rat)

Gene Details

ubiquitin specific peptidase 5 (isopeptidase T) (Usp5), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000020785, Rat)

Protein Percentage 98.6%
CDS Percentage 90.68%
Ka/Ks Ratio 0.01122 (Ka = 0.0062, Ks = 0.5521)

Genome Location

Sequence Coding sequence

Length: 2577 bp    Location: 3519112..3532687   Strand: +
Raw sequence   
>XM_004869456.1
ATGGCGGAGCTGAGCGAGGAGGCGCTGCTGTCAGTGTTACCAACGATCCGGGTCCCCAAGGCTGGCGACCGGGTCCACAAAGACGAGTGTGCCTTTTCCTTCGACACACCGGAGTCTGAGGGTGGCCTCTACATCTGCATGAACACATTCCTGGGCTTCGGGAAGCAATATGTGGAGAGACACTTCAACAAGACAGGCCAGCGTGTCTACCTGCACCTCCGGCGGACCCGGCGCCCGAAGGAAGAGGACGCTACTGCCGGCACTGGAGACCCGCCCCGTAAGAAGCCGACCCGGCTGGCTATCGGTGTCGAAGGCGGGTTTGACCTCTCGGAGGAAAAGTTTGAATATGACGAGGACGTGAAGATTGTCATTTTGCCAGACTACCTGGAGATTGCCCGGGATGGCCTGGGGGGACTGCCTGACATCGTCCAAGATCGGGTGACCAGTGCAGTGGAGGCCCTGCTCTCAGCCGACTCGGCCTCCCGCAAGCAGGAGGTGCAGGCCTGGGATGGGGAGGTCCGGCAGGTGTCCAAGCATGCCTTCAGCCTCAAGCAGTTGGACAACCCAGCCCGGATCCCTCCCTGTGGCTGGAAGTGCTCCAAGTGTGACATGAGGGAGAATCTATGGCTGAACCTGACAGATGGCTCCATCCTCTGTGGCCGGCGCTACTTTGATGGCAGTGGGGGCAACAACCACGCTGTGGAGCACTACAGGGAGACGGGCTACCCATTAGCTGTCAAGCTGGGCACCATCACTCCCGATGGAGCTGATGTGTACTCCTATGACGAAGATGACATGGTCCTGGACCCCAGCCTGGCCGAGCACCTGTCGCACTTCGGAATTGACATGCTGAAGATGCAGAAGACAGACAAGACGATGACAGAGCTGGAGATCGACATGAACCAGCGGATTGGCGAATGGGAGCTGATCCAGGAGTCGGGCGTGCCGCTGAAGCCCCTGTTCGGACCCGGCTACACAGGGATCCGGAACCTGGGAAACAGTTGCTACCTCAACTCTGTGGTCCAGGTGCTCTTCAGCATCCCCGACTTCCAGAGGAAGTATGTGGACAAGCTGGAGAAGATCTTCCAGAGTGCCCCCACGGACCCCACCCAGGACTTCAGCACCCAGGTGGCCAAGCTGGGCCATGGTCTTCTCTCGGGAGAGTATTCTAAGCCAGCACTGGAGTCGGGGGATGGGGAGCAGGTGCCAGAACAAAAGGAGGTGCAAGATGGCATTGCCCCGCGGATGTTCAAGGCCCTCATTGGCAAGGGCCACCCTGAGTTCTCTACGAACCGGCAGCAGGACGCCCAGGAGTTCTTCCTGCACCTCATCAACATGGTGGAGAGGAACTGCCGGAGCTCTGAAAACCCCAATGAAGTGTTCCGCTTTCTGGTGGAAGAGAAGATCAAGTGCCTGGCCACGGAGAAGGTGAAATACACCCAGCGAGTTGACTACATCATGCAGCTGCCCGTGCCCATGGACGCAGCCCTGAACAAAGAGGAGCTCCTGGAGTATGAGGAGAAGAAGCGGCAAGCTGAAGAGGAGAAGGTGCCACTGCCAGAGCTGGTTCGGGCCCAGGTGCCCTTCAGCTCCTGCCTGGAGGCCTACGGGGCCCCGGAACAGGTGGATGACTTCTGGAGCACAGCCCTGCAGGCCAAGTCGGTAGCTGTCAAGACCACACGGTTTGCCTCATTCCCCGACTACCTGGTCATCCAGATCAAGAAGTTCACCTTCGGCTTAGACTGGGTGCCCAAGAAACTGGATGTGTCCATTGAGATGCCAGAGGAGCTAGACATCTCCCAATTGAGGGGTACAGGGCTGCAGCCGGGAGAGGAGGAGCTGCCTGACATTGCCCCACCCCTGGTCACTCCGGATGAGCCCAAAGGTAGCCTTGGTTTCTATGGCAACGAAGACGAAGACTCCTTCTGCTCCCCTCACTTCTCCTCTCCAACATCACCCATGCTGGACGAGTCGGTCATCATACAGCTGGTGGAAATGGGCTTTCCCATGGACGCCTGCCGCAAGGCTGTCTACTACACGGGCAACAGTGGGGCTGAGGCCGCCATGAACTGGGTCATGTCACACATGGACGATCCAGATTTCGCAAACCCCCTCGTCCTGCCTGGCTCCAGTGGGCCAGGCTCCACAAGCGCAGCCGCCGACCCCCCACCGGAAGACTGTGTGGCCACCATTGTGTCCATGGGCTTCTCCAGAGACCAGGCCCTGAAAGCTCTGCGGGCCACGAACAATAGTTTGGAACGGGCCGTGGACTGGATCTTCAGTCACATTGACGATCTGGATGCGGAAGCAGCCATGGACATCTCCGAGGGCCGGTCAGCCGCTGACTCCATCTCTGAGTCTGTGCCAGTGGGACCTAAAGTCCGGGATGGCCCTGGAAAGTATCAGCTCTTTGCCTTCATTAGTCACATGGGCACCTCCACCATGTGTGGTCACTACGTCTGCCACATCAAGAAGGAAGGCAGATGGGTAATCTACAATGACCAGAAAGTGTGTGCCTCCGAGAAGCCGCCCAAGGACCTGGGCTACATCTACTTCTACCAGAGAGTGGCCAGCTAA

Related Sequences

XP_004869513.1 Protein

Usp5 PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Heterocephalus glaber]

Length: 858 aa      View alignments
>XP_004869513.1
MAELSEEALLSVLPTIRVPKAGDRVHKDECAFSFDTPESEGGLYICMNTFLGFGKQYVERHFNKTGQRVYLHLRRTRRPKEEDATAGTGDPPRKKPTRLAIGVEGGFDLSEEKFEYDEDVKIVILPDYLEIARDGLGGLPDIVQDRVTSAVEALLSADSASRKQEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDKTMTELEIDMNQRIGEWELIQESGVPLKPLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQSAPTDPTQDFSTQVAKLGHGLLSGEYSKPALESGDGEQVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRSSENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKVPLPELVRAQVPFSSCLEAYGAPEQVDDFWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKGSLGFYGNEDEDSFCSPHFSSPTSPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLVLPGSSGPGSTSAAADPPPEDCVATIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCASEKPPKDLGYIYFYQRVAS