Sequence details NCBI ID: XM_004869242.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Prpf38a
Gene Name PRP38 pre-mRNA processing factor 38 (yeast) domain containing A
Entrez Gene ID 101711167

Database interlinks

Part of NW_004624859.1 (Scaffold)

For more information consult the page for NW_004624859.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PRPF38A ENSCPOG00000005079 (Guinea pig)

Gene Details

pre-mRNA processing factor 38A

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004567, Guinea pig)

Protein Percentage 100.0%
CDS Percentage 95.41%
Ka/Ks Ratio 0.001 (Ka = 0.0002, Ks = 0.1894)

PRPF38A ENSG00000134748 (Human)

Gene Details

pre-mRNA processing factor 38A

External Links

Gene Match (Ensembl Protein ID: ENSP00000257181, Human)

Protein Percentage 100.0%
CDS Percentage 93.59%
Ka/Ks Ratio 0.001 (Ka = 0.0003, Ks = 0.3037)

Prpf38a ENSMUSG00000063800 (Mouse)

Gene Details

PRP38 pre-mRNA processing factor 38 (yeast) domain containing A

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000078207, Mouse)

Protein Percentage 98.72%
CDS Percentage 90.28%
Ka/Ks Ratio 0.00981 (Ka = 0.0055, Ks = 0.565)

Prpf38a ENSRNOG00000009451 (Rat)

Gene Details

PRP38 pre-mRNA processing factor 38 (yeast) domain containing A (Prpf38a), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000012635, Rat)

Protein Percentage 99.36%
CDS Percentage 89.64%
Ka/Ks Ratio 0.00489 (Ka = 0.0028, Ks = 0.5798)

Genome Location

Sequence Coding sequence

Length: 939 bp    Location: 833281..809632   Strand: -
Raw sequence   
>XM_004869242.1
ATGGCGAACCGTACAGTGAAGGATGCGCACAGCATCCATGGCACCAACCCCCAGTATCTGGTGGAGAAGATCATTCGGACGCGAATCTATGAATCGAAGTACTGGAAAGAAGAGTGCTTTGGACTTACGGCTGAACTTGTAGTTGATAAAGCCATGGAGTTAAGGTTTGTGGGTGGTGTCTATGGTGGAAACATAAAACCAACTCCCTTTCTGTGTTTGACCTTGAAGATGCTTCAAATTCAGCCTGAGAAGGATATCATCGTAGAGTTTATAAAAAATGAAGATTTCAAGTATGTCCGCATGTTGGGTGCACTTTACATGAGGCTGACTGGCACTGCAATTGATTGCTACAAGTACTTGGAACCTTTGTACAATGACTATCGAAAAATCAAGAGCCAGAACCGAAATGGAGAGTTTGAACTGATGCATGTAGATGAATTTATTGATGAACTGCTGCACAGTGAGAGAGTCTGTGATATCATTCTGCCCCGACTACAGAAACGCTACGTGCTAGAAGAAGCTGAGCAACTGGAGCCTCGAGTTAGTGCTCTGGAAGAAGACATGGATGATGTGGAGTCTAGTGAAGAGGAAGAGGAAGAAGATGAGAAGCTGGAAAGAGTCCCATCACCTGATCATCGCCGGAGAAGCTACCGAGACTTGGACAAGCCCCGTCGCTCTCCCACACTGCGGTACAGGAGGAGTAGGAGTCGGTCTCCCAGAAGGCGGAGTCGGTCTCCCAAAAGAAGAAGTCCTTCACCCCGCAGAGAAAGGCATCGGAGCAAGAGCCCAAGACGCCACAGAAGCAGGTCCCGAGATCGACGACACAGGTCCCGCTCTAAGTCCCCAGGTCATCACCGTAGTCACAGACACAGGAGCCACTCAAAGTCTCCTGAAAGGTCAAAGAAAAGCCATAAGAAGAGCCGGAGAGGGAATGAGTAA

Related Sequences

XP_004869299.1 Protein

Prpf38a PREDICTED: pre-mRNA-splicing factor 38A [Heterocephalus glaber]

Length: 312 aa      View alignments
>XP_004869299.1
MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPRVSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRDLDKPRRSPTLRYRRSRSRSPRRRSRSPKRRSPSPRRERHRSKSPRRHRSRSRDRRHRSRSKSPGHHRSHRHRSHSKSPERSKKSHKKSRRGNE