Sequence details NCBI ID: XM_004869154.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Col11a1
Gene Name collagen, type XI, alpha 1, transcript variant X8
Entrez Gene ID 101700649

Database interlinks

Part of NW_004624857.1 (Scaffold)

For more information consult the page for NW_004624857.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL11A1 ENSCPOG00000012629 (Guinea pig)

Gene Details

collagen, type XI, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011361, Guinea pig)

Protein Percentage 91.24%
CDS Percentage 89.65%
Ka/Ks Ratio 0.26913 (Ka = 0.0693, Ks = 0.2576)

COL11A1 ENSG00000060718 (Human)

Gene Details

collagen, type XI, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000359114, Human)

Protein Percentage 96.63%
CDS Percentage 92.7%
Ka/Ks Ratio 0.0598 (Ka = 0.0167, Ks = 0.2799)

Col11a1 ENSMUSG00000027966 (Mouse)

Gene Details

collagen, type XI, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000089793, Mouse)

Protein Percentage 94.08%
CDS Percentage 88.25%
Ka/Ks Ratio 0.06013 (Ka = 0.0308, Ks = 0.5118)

Col11a1 ENSRNOG00000023148 (Rat)

Gene Details

collagen, type XI, alpha 1 (Col11a1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000023794, Rat)

Protein Percentage 92.71%
CDS Percentage 87.03%
Ka/Ks Ratio 0.07701 (Ka = 0.0424, Ks = 0.5505)

Genome Location

Sequence Coding sequence

Length: 5073 bp    Location: 6028748..5817475   Strand: -
Raw sequence   
>XM_004869154.1
ATGGAGTCGTGGTCCTCTAGATGGAAAATGAAACAGTGGCTCTGGGATTTCAGCTTAACAACCCTCGCATTGACTTTCCTCTTCCAAGCTAGAGAGGTCAGAGGAGCTACTCCAGTTGATGTACTAAAAGCACTAGATTTTCACAGTTCTCCAGAGGGAATATCAAAAACAATGGGATTTTGCACAAACAGAAAGAATTCTAAAGGTTCAGATACTGCGTATAGAGTTTCAAAGTTAGCACAACTCAGTGCCCCAACAAAACAGTTATTTCCAGGTGGCAGTTTTCCAGAGGATTTTTCAATATTGTTTACAGTAAAACCCAAAAAAGGAATTCAGTCTTTCCTTTTATCCATATATAATGAGCATGGCATTCAGCAAATTGGTGTTGAGGTTGGGAGATCACCTGTTTTTCTGTTCGAAGACCACACTGGAAAACCTGCCCCGGAAGACTACCCACTCTTCAGAACTGTTAACATCGCTGATGGGAAGTGGCATCGGGTAGCAATCAGTGTGGAGAAGAAAACTGTGACAATGATTGTTGATTGTAAGAAGAAAACCACAAAACCACTTGACAGAAGTGAGAGATCAATTGTTGATACCAATGGAATCACAGTTTTTGGAACAAGAATTTTAGATGAAGAAGTTTTTGAGGGGGACATCCAGCAGTTTTTGATCACCGGTGACCCCAAGGCGGCATATGACTACTGTGAGCATTATAGTCTCGACTGTGACTCTTCAGCATCAAAGGCTGCTCAGGCTCAGGAACCTCAGATAGATGAGTATGCACCTGAGGATATAATCGAATATGATTATGAGTATGGGGAAACAGACTATAAAGAGGCTGAAAGTGTGACAGAGAGACCCACTGTAACTGAGGAGACAATAGCCCAAACAGAGATAAATGGCCATGGTGTATACGGAGAAAAAGGACAGAAAGGAGAACCAGCAGTGGTCGAACCTGGTATGCTTGTTGAAGGACCACCAGGGCCAGCAGGACCTGTGGGTCTCATGGGTCCTCCAGGTCTACAAGGACCCTCTGGACCCCCTGGTGACCCTGGTGATAGGGGCCCTCCAGGACGTCCTGGTTTACCAGGGGCTGATGGTCTACCTGGCCCTCCTGGTACCATGTTAATGTTACCATTTCGTTATGGTGGGGATGGTTCTAAAGGACCAACTGTCTCTGCTCAGGAAGCACAGGCTCAGGCCATACTGCAGCAGGCTCGGATTGCTCTGAGAGGCCCACCTGGCCCAATGGGTCTGACTGGAAGACCAGGTCCTGTGGGAGGACCTGGGTCATCTGGGGCCAAAGGTGAGAGTGGTGATCCTGGTCCTCAGGGCCCTCGAGGTGTACAAGGTCCTCCTGGTCCAACAGGAAAACCTGGAAAAAGGGGTCGTCCAGGTGCAGATGGAGGAAGAGGAATGCCCGGAGAGCCCGGATCAAAGGGAGATCGAGGGTTTGATGGACTTCCTGGTCTACCGGGTGACAAAGGTCACAGGGGTGAAAGAGGCCCTCAAGGTCCTCCTGGTTCTCCTGGAGATGATGGAATGAGGGGAGAAGATGGAGAAATAGGGCCAAGGGGTCTTCCAGGTGAAGCGGGCCCACGAGGATTGCTGGGACCACGAGGAACTCCTGGACCTCCCGGACAGCCTGGCATCGCAGGTGTAGATGGCCCCCCTGGACCGAAAGGGAATATGGGTCCCCAAGGGGAGCCTGGACCTCCAGGTCAGCAAGGAAATCCAGGACCTCAAGGTCTTCCTGGTCCACAAGGTCCAATTGGTCCTCCTGGTGAAAAAGGACCACAAGGAAAACCAGGTCTTGCTGGGCTTCCTGGTGCTGATGGGCCTCCTGGTCACCCTGGAAAAGAAGGCCAGTCTGGAGAAAAGGGTGCTCTGGGTCCTCTTGGTCCACAGGGTCCTATTGGCTACCCTGGTCCCCGAGGAGTAAAGGGAGCAGATGGTGTCAGGGGTCTCAAAGGATCAAAAGGTGAAAAGGGTGAAGATGGCTTTCCAGGTTTCAAAGGTGACATGGGTCTTAAGGGTGATAGAGGAGAAGTTGGTCAAATAGGCCCAAGAGGAGAAGATGGCCCTGAGGGACCCAAAGGTCGCGCAGGTCCAACTGGAGACACAGGTCCTCCTGGCCAAGCAGGAGAGAAGGGGAAACTTGGAGTTCCAGGATTACCAGGATATCCAGGAAGACAAGGTCAAAAGGGTTCCACTGGATTTCCTGGGTTCCCGGGTGCCAATGGGGAGAAAGGTGCACGGGGAGTAGCTGGCAAACCAGGCCCTCGAGGTCAACGTGGACCAACGGGTCCTCGAGGTTCCAGAGGAGCAAGAGGTCCCACGGGGAAACCAGGGCCAAAGGGAACTTCAGGTGGTGATGGTCCTCCTGGCCCTCCAGGTGAAAGAGGTCCTCAAGGACCTCAGGGCCCAGTTGGATTCCCTGGACCAAAAGGCCCTCCTGGTCCACCTGGAAAGGATGGGCTACCAGGACACCCTGGGCAACGAGGGGAAACTGGGTTTCAAGGCAAGACTGGGCCCCCTGGGCCAGGAGGTGTTGTTGGACCACAGGGACCAACCGGTGAGACTGGCCCAATAGGTGAACGTGGGCATCCTGGCCCTCCTGGCCCTCCTGGTGAGCAAGGTCTTCCTGGTGCTGCAGGAAAGGAAGGTGCAAAGGGTGACCCAGGTCCTCAGGGTATCTCAGGGAAAGATGGACCTGCAGGATTACGTGGTTTCCCAGGTGAAAGAGGACTTCCTGGAGCTCAGGGTGCACCTGGACTGAAAGGAGGAGAAGGTCCCCAGGGCCCACCAGGTCCAGTGGGCTCACCAGGAGAACGCGGATCAGCAGGGAGCGCTGGCCCCATTGGTTTGCCAGGGCGTCCAGGACCCCAGGGACCTCCTGGACCAGCTGGAGAGAAAGGTGCTCCTGGAGAAAAAGGTCCCCAAGGCCCTGCAGGGAGAGATGGAGTTCAAGGTCCTGTGGGTCTCCCGGGGCCAGCTGGTCCTGCTGGCTCTCCTGGGGAAGATGGAGACAAGGGTGAAATTGGTGAACCAGGACAAAAAGGCAGCAAGGGTGACAAAGGAGAAAATGGTCCTCCTGGCCCCCCGGGTCTCCAAGGACCAGTTGGTGCCCCTGGAATTGCTGGGGGTGATGGTGAGCCAGGCCCCAGAGGACAGCAGGGCATGTTTGGACAAAAAGGAGATGAAGGCTCAAGAGGTTTCCCTGGACCTCCTGGTCCCATAGGTCTTCAGGGCTTACCAGGCCCACCTGGTGAAAAAGGAGAAAATGGAGATGTTGGCCCCATGGGTCCACCTGGTCCTCCTGGCCCAAGAGGTCCTCAAGGTCCCAATGGAGCTGATGGACCACAAGGACCCCCAGGATCTATTGGATCAGTTGGTGGTGTTGGAGAAAAGGGTGAACCTGGAGAAGCAGGGAACCCAGGGCCCCCTGGTGAAGCAGGCACAGGTGGTCCCAAAGGAGAAAGAGGAGAGAAAGGAGAAGCTGGCTCACCTGGTGCTGCTGGACCTCCTGGTCTTAAGGGGCCACCGGGTGATGATGGCCCCAAGGGTAACCCGGGTCCTGTTGGTTTTCCTGGAGATCCTGGTCCTCCTGGCGAACCTGGCCCAGCAGGTCAAGACGGTGTTGGTGGTGACAAGGGTGAAGATGGAGATCCCGGACAACCGGGTCCTCCTGGTCCATCTGGTGAAGCTGGCCCACCAGGTCCTCCTGGAAAAAGAGGTCCTCCTGGAGCTGCAGGTGCAGAGGGAAGACAAGGAGAAAAAGGTGCCAAGGGAGAAGCAGGTGCTGAAGGTCCTCCTGGGAAAACTGGCCCAGTCGGCCCTCAGGGTCCTGCTGGGAAGCCTGGTCCAGAGGGTCTTCGCGGCATTCCTGGCCCTGTGGGAGAACAAGGTCTCCCTGGAGCTGCAGGCCAAGATGGACCACCTGGACCTATAGGACCTCCTGGCTTACCCGGTCTCAAAGGTGACCCTGGCTTCAAGGGTGAAAAGGGACATCCTGGTTTAATTGGCCTGATTGGTCCTCCAGGAGAGCAAGGAGAAAAAGGTGACAGAGGGCTCCCTGGTACCCAAGGATCTCCAGGAGTAAAAGGGGACGGAGGAAGTCCAGGTCCTGCTGGCCCCATAGGCCCACCTGGTCCTCCGGGCTTACCAGGTCCTCAAGGCCAAAAGGGTAATAAAGGCTCTTCTGGACCTGCTGGCCAAAAGGGTGACAGTGGTCTTCCAGGGCTTCCTGGACCTCCAGGTCCTCCTGGCGAGGTCATTCAGCCTTTACCTATCTTGTCACCCAAAAAAACCAGAAGACATGCTGAAAGTATGCAAGCAGATGCAGGTGATAATATTCTTGATTATTCAGATGGAATGGAGGAAATATTTGGTTCACTTAATTCCCTGAAACAAGACATTGAGCATATGAAGTTTCCAATGGGTACTCAGACAAATCCAGCCCGAACTTGCAAAGACCTGCAACTCAGCCATCCTGACTTCCCAGATGGTGAATATTGGATTGATCCTAACCAAGGTTGTTCAGGAGATTCCTTCAAAGTTTATTGCAATTTCACATCTGGTGGTGAGACTTGCATTTATCCAGACAAAAAATCTGAGGGAGTAAGAATTTCATCATGGCCAAAGGAGAAACCAGGAAGTTGGTTTAGTGAATTTAAAAGAGGAAAACTGCTTTCATATGTAGATGTTGAAGGAAATTCCATTAACATGGTACAAATGACATTCCTAAAACTTCTGACTGCTTCTGCTCGGCAAAATTTCACCTACAACTGTCATCAGTCAGTTGCCTGGTATGATATGTCATCAGGAAGTTATGACAAAGCACTTCGGTTCCTGGGATCAAATGATGAGGAGATGTCCTACGATAACAACCCTTACATCAAAGCACTGTATGACGGCTGTGCGTCCAGAAAAGGCTATGACAAGACTGTGATTGAAATCAATACACCGAAAATTGATCAAGTACCTATCATTGATGTAATGATCAATGACTTTGGTGATCAGAATCAGAAATGTGGATTTGAAGTTGGTCCAGTTTGTTTTCTTGGCTAA

Related Sequences

XP_004869211.1 Protein

Col11a1 PREDICTED: collagen alpha-1(XI) chain isoform X8 [Heterocephalus glaber]

Length: 1690 aa      View alignments
>XP_004869211.1
MESWSSRWKMKQWLWDFSLTTLALTFLFQAREVRGATPVDVLKALDFHSSPEGISKTMGFCTNRKNSKGSDTAYRVSKLAQLSAPTKQLFPGGSFPEDFSILFTVKPKKGIQSFLLSIYNEHGIQQIGVEVGRSPVFLFEDHTGKPAPEDYPLFRTVNIADGKWHRVAISVEKKTVTMIVDCKKKTTKPLDRSERSIVDTNGITVFGTRILDEEVFEGDIQQFLITGDPKAAYDYCEHYSLDCDSSASKAAQAQEPQIDEYAPEDIIEYDYEYGETDYKEAESVTERPTVTEETIAQTEINGHGVYGEKGQKGEPAVVEPGMLVEGPPGPAGPVGLMGPPGLQGPSGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTVSAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGSKGDRGFDGLPGLPGDKGHRGERGPQGPPGSPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPPGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPLGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDTGPPGQAGEKGKLGVPGLPGYPGRQGQKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGSAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGSRGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEAGNPGPPGEAGTGGPKGERGEKGEAGSPGAAGPPGLKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPIGPPGLPGLKGDPGFKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGVKGDGGSPGPAGPIGPPGPPGLPGPQGQKGNKGSSGPAGQKGDSGLPGLPGPPGPPGEVIQPLPILSPKKTRRHAESMQADAGDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSEGVRISSWPKEKPGSWFSEFKRGKLLSYVDVEGNSINMVQMTFLKLLTASARQNFTYNCHQSVAWYDMSSGSYDKALRFLGSNDEEMSYDNNPYIKALYDGCASRKGYDKTVIEINTPKIDQVPIIDVMINDFGDQNQKCGFEVGPVCFLG