Sequence details NCBI ID: XM_004869151.1 (Coding sequence)

Details from NCBI annotation

Gene Symbol Col11a1
Gene Name collagen, type XI, alpha 1, transcript variant X5
Entrez Gene ID 101700649

Database interlinks

Part of NW_004624857.1 (Scaffold)

For more information consult the page for NW_004624857.1 (Scaffold)

Genome Location

Sequence Coding sequence

Length: 5373 bp    Location: 6176406..5817475   Strand: -
Raw sequence   
>XM_004869151.1
ATGCCACAGAGGAAGGACCATGGACCCAGTATCCAAGGTCACGCCTCCTTCACCCACTCAGCTACTCCAGTTGATGTACTAAAAGCACTAGATTTTCACAGTTCTCCAGAGGGAATATCAAAAACAATGGGATTTTGCACAAACAGAAAGAATTCTAAAGGTTCAGATACTGCGTATAGAGTTTCAAAGTTAGCACAACTCAGTGCCCCAACAAAACAGTTATTTCCAGGTGGCAGTTTTCCAGAGGATTTTTCAATATTGTTTACAGTAAAACCCAAAAAAGGAATTCAGTCTTTCCTTTTATCCATATATAATGAGCATGGCATTCAGCAAATTGGTGTTGAGGTTGGGAGATCACCTGTTTTTCTGTTCGAAGACCACACTGGAAAACCTGCCCCGGAAGACTACCCACTCTTCAGAACTGTTAACATCGCTGATGGGAAGTGGCATCGGGTAGCAATCAGTGTGGAGAAGAAAACTGTGACAATGATTGTTGATTGTAAGAAGAAAACCACAAAACCACTTGACAGAAGTGAGAGATCAATTGTTGATACCAATGGAATCACAGTTTTTGGAACAAGAATTTTAGATGAAGAAGTTTTTGAGGGGGACATCCAGCAGTTTTTGATCACCGGTGACCCCAAGGCGGCATATGACTACTGTGAGCATTATAGTCTCGACTGTGACTCTTCAGCATCAAAGGCTGCTCAGGCTCAGGAACCTCAGATAGATGAGTATGCACCTGAGGATATAATCGAATATGATTATGAGTATGGGGAAACAGACTATAAAGAGGCTGAAAGTGTGACAGAGAGACCCACTGTAACTGAGGAGACAATAGCCCAAACAGAGGCAAATATTGTTGATGATTTTCAAGAATATAACTATGGAACAATGGAAAGTTATCAGACAGAAGCTCCTCACCGTGTATCTGGATCAAATGAGCCAAATCCAGCTGAAGATGTTTTTACTGAAGAATATATAACTGGAGAGGATTATGCCCAGAGGAAAAATTCCGAGGATACTCTATATGAAAATAGAGACATAGACAGCAGGGACCCTGATCTTCTGGTAGATGGAGATTTAGGCGAATATGATTTTTATGAATATAAAGACTATGAAGATAAACCAACAAGTCCCCCTAATGAAGAATTTGGTCCAGGTGTACCAGCAGAAACTGATTTCACAGAAACAAGCATAAATGGCCATGGTGTATACGGAGAAAAAGGACAGAAAGGAGAACCAGCAGTGGTCGAACCTGGTATGCTTGTTGAAGGACCACCAGGGCCAGCAGGACCTGTGGGTCTCATGGGTCCTCCAGGTCTACAAGGACCCTCTGGACCCCCTGGTGACCCTGGTGATAGGGGCCCTCCAGGACGTCCTGGTTTACCAGGGGCTGATGGTCTACCTGGCCCTCCTGGTACCATGTTAATGTTACCATTTCGTTATGGTGGGGATGGTTCTAAAGGACCAACTGTCTCTGCTCAGGAAGCACAGGCTCAGGCCATACTGCAGCAGGCTCGGATTGCTCTGAGAGGCCCACCTGGCCCAATGGGTCTGACTGGAAGACCAGGTCCTGTGGGAGGACCTGGGTCATCTGGGGCCAAAGGTGAGAGTGGTGATCCTGGTCCTCAGGGCCCTCGAGGTGTACAAGGTCCTCCTGGTCCAACAGGAAAACCTGGAAAAAGGGGTCGTCCAGGTGCAGATGGAGGAAGAGGAATGCCCGGAGAGCCCGGATCAAAGGGAGATCGAGGGTTTGATGGACTTCCTGGTCTACCGGGTGACAAAGGTCACAGGGGTGAAAGAGGCCCTCAAGGTCCTCCTGGTTCTCCTGGAGATGATGGAATGAGGGGAGAAGATGGAGAAATAGGGCCAAGGGGTCTTCCAGGTGAAGCGGGCCCACGAGGATTGCTGGGACCACGAGGAACTCCTGGACCTCCCGGACAGCCTGGCATCGCAGGTGTAGATGGCCCCCCTGGACCGAAAGGGAATATGGGTCCCCAAGGGGAGCCTGGACCTCCAGGTCAGCAAGGAAATCCAGGACCTCAAGGTCTTCCTGGTCCACAAGGTCCAATTGGTCCTCCTGGTGAAAAAGGACCACAAGGAAAACCAGGTCTTGCTGGGCTTCCTGGTGCTGATGGGCCTCCTGGTCACCCTGGAAAAGAAGGCCAGTCTGGAGAAAAGGGTGCTCTGGGTCCTCTTGGTCCACAGGGTCCTATTGGCTACCCTGGTCCCCGAGGAGTAAAGGGAGCAGATGGTGTCAGGGGTCTCAAAGGATCAAAAGGTGAAAAGGGTGAAGATGGCTTTCCAGGTTTCAAAGGTGACATGGGTCTTAAGGGTGATAGAGGAGAAGTTGGTCAAATAGGCCCAAGAGGAGAAGATGGCCCTGAGGGACCCAAAGGTCGCGCAGGTCCAACTGGAGACACAGGTCCTCCTGGCCAAGCAGGAGAGAAGGGGAAACTTGGAGTTCCAGGATTACCAGGATATCCAGGAAGACAAGGTCAAAAGGGTTCCACTGGATTTCCTGGGTTCCCGGGTGCCAATGGGGAGAAAGGTGCACGGGGAGTAGCTGGCAAACCAGGCCCTCGAGGTCAACGTGGACCAACGGGTCCTCGAGGTTCCAGAGGAGCAAGAGGTCCCACGGGGAAACCAGGGCCAAAGGGAACTTCAGGTGGTGATGGTCCTCCTGGCCCTCCAGGTGAAAGAGGTCCTCAAGGACCTCAGGGCCCAGTTGGATTCCCTGGACCAAAAGGCCCTCCTGGTCCACCTGGAAAGGATGGGCTACCAGGACACCCTGGGCAACGAGGGGAAACTGGGTTTCAAGGCAAGACTGGGCCCCCTGGGCCAGGAGGTGTTGTTGGACCACAGGGACCAACCGGTGAGACTGGCCCAATAGGTGAACGTGGGCATCCTGGCCCTCCTGGCCCTCCTGGTGAGCAAGGTCTTCCTGGTGCTGCAGGAAAGGAAGGTGCAAAGGGTGACCCAGGTCCTCAGGGTATCTCAGGGAAAGATGGACCTGCAGGATTACGTGGTTTCCCAGGTGAAAGAGGACTTCCTGGAGCTCAGGGTGCACCTGGACTGAAAGGAGGAGAAGGTCCCCAGGGCCCACCAGGTCCAGTGGGCTCACCAGGAGAACGCGGATCAGCAGGGAGCGCTGGCCCCATTGGTTTGCCAGGGCGTCCAGGACCCCAGGGACCTCCTGGACCAGCTGGAGAGAAAGGTGCTCCTGGAGAAAAAGGTCCCCAAGGCCCTGCAGGGAGAGATGGAGTTCAAGGTCCTGTGGGTCTCCCGGGGCCAGCTGGTCCTGCTGGCTCTCCTGGGGAAGATGGAGACAAGGGTGAAATTGGTGAACCAGGACAAAAAGGCAGCAAGGGTGACAAAGGAGAAAATGGTCCTCCTGGCCCCCCGGGTCTCCAAGGACCAGTTGGTGCCCCTGGAATTGCTGGGGGTGATGGTGAGCCAGGCCCCAGAGGACAGCAGGGCATGTTTGGACAAAAAGGAGATGAAGGCTCAAGAGGTTTCCCTGGACCTCCTGGTCCCATAGGTCTTCAGGGCTTACCAGGCCCACCTGGTGAAAAAGGAGAAAATGGAGATGTTGGCCCCATGGGTCCACCTGGTCCTCCTGGCCCAAGAGGTCCTCAAGGTCCCAATGGAGCTGATGGACCACAAGGACCCCCAGGATCTATTGGATCAGTTGGTGGTGTTGGAGAAAAGGGTGAACCTGGAGAAGCAGGGAACCCAGGGCCCCCTGGTGAAGCAGGCACAGGTGGTCCCAAAGGAGAAAGAGGAGAGAAAGGAGAAGCTGGCTCACCTGGTGCTGCTGGACCTCCTGGTCTTAAGGGGCCACCGGGTGATGATGGCCCCAAGGGTAACCCGGGTCCTGTTGGTTTTCCTGGAGATCCTGGTCCTCCTGGCGAACCTGGCCCAGCAGGTCAAGACGGTGTTGGTGGTGACAAGGGTGAAGATGGAGATCCCGGACAACCGGGTCCTCCTGGTCCATCTGGTGAAGCTGGCCCACCAGGTCCTCCTGGAAAAAGAGGTCCTCCTGGAGCTGCAGGTGCAGAGGGAAGACAAGGAGAAAAAGGTGCCAAGGGAGAAGCAGGTGCTGAAGGTCCTCCTGGGAAAACTGGCCCAGTCGGCCCTCAGGGTCCTGCTGGGAAGCCTGGTCCAGAGGGTCTTCGCGGCATTCCTGGCCCTGTGGGAGAACAAGGTCTCCCTGGAGCTGCAGGCCAAGATGGACCACCTGGACCTATAGGACCTCCTGGCTTACCCGGTCTCAAAGGTGACCCTGGCTTCAAGGGTGAAAAGGGACATCCTGGTTTAATTGGCCTGATTGGTCCTCCAGGAGAGCAAGGAGAAAAAGGTGACAGAGGGCTCCCTGGTACCCAAGGATCTCCAGGAGTAAAAGGGGACGGAGGAAGTCCAGGTCCTGCTGGCCCCATAGGCCCACCTGGTCCTCCGGGCTTACCAGGTCCTCAAGGCCAAAAGGGTAATAAAGGCTCTTCTGGACCTGCTGGCCAAAAGGGTGACAGTGGTCTTCCAGGGCTTCCTGGACCTCCAGGTCCTCCTGGCGAGGTCATTCAGCCTTTACCTATCTTGTCACCCAAAAAAACCAGAAGACATGCTGAAAGTATGCAAGCAGATGCAGGTGATAATATTCTTGATTATTCAGATGGAATGGAGGAAATATTTGGTTCACTTAATTCCCTGAAACAAGACATTGAGCATATGAAGTTTCCAATGGGTACTCAGACAAATCCAGCCCGAACTTGCAAAGACCTGCAACTCAGCCATCCTGACTTCCCAGATGGTGAATATTGGATTGATCCTAACCAAGGTTGTTCAGGAGATTCCTTCAAAGTTTATTGCAATTTCACATCTGGTGGTGAGACTTGCATTTATCCAGACAAAAAATCTGAGGGAGTAAGAATTTCATCATGGCCAAAGGAGAAACCAGGAAGTTGGTTTAGTGAATTTAAAAGAGGAAAACTGCTTTCATATGTAGATGTTGAAGGAAATTCCATTAACATGGTACAAATGACATTCCTAAAACTTCTGACTGCTTCTGCTCGGCAAAATTTCACCTACAACTGTCATCAGTCAGTTGCCTGGTATGATATGTCATCAGGAAGTTATGACAAAGCACTTCGGTTCCTGGGATCAAATGATGAGGAGATGTCCTACGATAACAACCCTTACATCAAAGCACTGTATGACGGCTGTGCGTCCAGAAAAGGCTATGACAAGACTGTGATTGAAATCAATACACCGAAAATTGATCAAGTACCTATCATTGATGTAATGATCAATGACTTTGGTGATCAGAATCAGAAATGTGGATTTGAAGTTGGTCCAGTTTGTTTTCTTGGCTAA

Related Sequences

XP_004869208.1 Protein

Col11a1 PREDICTED: collagen alpha-1(XI) chain isoform X5 [Heterocephalus glaber]

Length: 1790 aa      
>XP_004869208.1
MPQRKDHGPSIQGHASFTHSATPVDVLKALDFHSSPEGISKTMGFCTNRKNSKGSDTAYRVSKLAQLSAPTKQLFPGGSFPEDFSILFTVKPKKGIQSFLLSIYNEHGIQQIGVEVGRSPVFLFEDHTGKPAPEDYPLFRTVNIADGKWHRVAISVEKKTVTMIVDCKKKTTKPLDRSERSIVDTNGITVFGTRILDEEVFEGDIQQFLITGDPKAAYDYCEHYSLDCDSSASKAAQAQEPQIDEYAPEDIIEYDYEYGETDYKEAESVTERPTVTEETIAQTEANIVDDFQEYNYGTMESYQTEAPHRVSGSNEPNPAEDVFTEEYITGEDYAQRKNSEDTLYENRDIDSRDPDLLVDGDLGEYDFYEYKDYEDKPTSPPNEEFGPGVPAETDFTETSINGHGVYGEKGQKGEPAVVEPGMLVEGPPGPAGPVGLMGPPGLQGPSGPPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTVSAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGSKGDRGFDGLPGLPGDKGHRGERGPQGPPGSPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPPGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPLGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDTGPPGQAGEKGKLGVPGLPGYPGRQGQKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGSAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGSRGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEAGNPGPPGEAGTGGPKGERGEKGEAGSPGAAGPPGLKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPIGPPGLPGLKGDPGFKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGVKGDGGSPGPAGPIGPPGPPGLPGPQGQKGNKGSSGPAGQKGDSGLPGLPGPPGPPGEVIQPLPILSPKKTRRHAESMQADAGDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSEGVRISSWPKEKPGSWFSEFKRGKLLSYVDVEGNSINMVQMTFLKLLTASARQNFTYNCHQSVAWYDMSSGSYDKALRFLGSNDEEMSYDNNPYIKALYDGCASRKGYDKTVIEINTPKIDQVPIIDVMINDFGDQNQKCGFEVGPVCFLG