Sequence details NCBI ID: XM_004868921.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Lsm6
Gene Name LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae), transcript variant X2
Entrez Gene ID 101699334

Database interlinks

Part of NW_004624853.1 (Scaffold)

For more information consult the page for NW_004624853.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LSM6 ENSCPOG00000015389 (Guinea pig)

Gene Details

LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013874, Guinea pig)

Protein Percentage 100.0%
CDS Percentage 97.08%
Ka/Ks Ratio 0.001 (Ka = 0.0001, Ks = 0.1305)

LSM6 ENSG00000164167 (Human)

Gene Details

LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000422392, Human)

Protein Percentage 100.0%
CDS Percentage 95.83%
Ka/Ks Ratio 0.001 (Ka = 0.0003, Ks = 0.2666)

Lsm6 ENSMUSG00000031683 (Mouse)

Gene Details

LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000119841, Mouse)

Protein Percentage 100.0%
CDS Percentage 91.67%
Ka/Ks Ratio 0.001 (Ka = 0.0004, Ks = 0.422)

Genome Location

Sequence Coding sequence

Length: 243 bp    Location: 5044909..5059136   Strand: +
Raw sequence   
>XM_004868921.1
ATGAGTCTGCGGAAGCAAACCCCTAGTGACTTCTTAAAGCAAATCATCGGAAGGCCAGTTGTGGTCAAATTAAATTCAGGAGTGGATTATCGAGGGGTCCTGGCTTGCCTGGATGGCTACATGAATATAGCCCTGGAGCAGACAGAAGAGTATGTAAATGGACAACTGAAGAATAAGTATGGGGATGCATTTATCCGAGGAAACAATGTATTATACATAAGTACACAGAAGAGAAGGATGTGA

Related Sequences

XP_004868978.1 Protein

Lsm6 PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform X2 [Heterocephalus glaber]

Length: 80 aa      View alignments
>XP_004868978.1
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM