Sequence details NCBI ID: XM_004868854.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Psmb1
Gene Name proteasome (prosome, macropain) subunit, beta type, 1
Entrez Gene ID 101701261

Database interlinks

Part of NW_004624850.1 (Scaffold)

For more information consult the page for NW_004624850.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PSMB1 ENSCPOG00000001187 (Guinea pig)

Gene Details

proteasome (prosome, macropain) subunit, beta type, 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001071, Guinea pig)

Protein Percentage 93.75%
CDS Percentage 91.94%
Ka/Ks Ratio 0.10585 (Ka = 0.0293, Ks = 0.2771)

PSMB1 ENSG00000008018 (Human)

Gene Details

proteasome (prosome, macropain) subunit, beta type, 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000262193, Human)

Protein Percentage 92.92%
CDS Percentage 89.44%
Ka/Ks Ratio 0.08682 (Ka = 0.034, Ks = 0.3916)

Psmb1 ENSMUSG00000014769 (Mouse)

Gene Details

proteasome (prosome, macropain) subunit, beta type 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000014913, Mouse)

Protein Percentage 92.5%
CDS Percentage 84.44%
Ka/Ks Ratio 0.05759 (Ka = 0.0426, Ks = 0.7404)

Psmb1 ENSRNOG00000001488 (Rat)

Gene Details

proteasome (prosome, macropain) subunit, beta type 1 (Psmb1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000002037, Rat)

Protein Percentage 92.08%
CDS Percentage 85.14%
Ka/Ks Ratio 0.07115 (Ka = 0.047, Ks = 0.66)

Genome Location

Sequence Coding sequence

Length: 723 bp    Location: 6357891..6339918   Strand: -
Raw sequence   
>XM_004868854.1
ATGTTGTCCACATCCTTGTACTCGGGATCCGGCAGAGAGCTGGGGGTGGAGCCGTACAGCGCCGTGGCCCCTTTGCAGCATCGCTTTTCTCCCTATGCTTTCAACGGAGGAACTGTATTGGCAATTGCTGGAGAAGATTTTTCAATTGTTGCTTCTGACACTCGATTGAGCGAGGGCTTTTCCATTCACACCCGGAACAGCCCCAAATGTTATAAATTAACAGACAAAACAGTCATTGGATGCAGCGGTTTTCATGGAGACTGCCTTACCCTGACAAAGATTATTGAAGCAAGACTAAAGATGTACAAGCATTCCAATAATAAGGCCATGACAACAGGAGCAATTGCTGCGATGCTGTCTACAATCCTGTACTCCAGGCGCTTCTTCCCATACTACGTTTACAACATTATTGGGGGACTCGATGAAGAAGGGAAGGGAGCTGTGTATAGCTTCGATCCAGTGGGCTCCTACCAGAGAGACTCCTTCAAGGCTGGAGGCTCAGCAAGTGCCATGCTGCAGCCCTTGCTTGACAACCAGGTTGGTTTCAAGAACATGCAGAATGTGGAACATGTTCCGCTCTCTTTGGACAGAGCCATGCGGCTGGTGAAAGATGTCTTCATTTCTGCAGCTGAGAGGGATGTGTACACCGGGGACGCCCTCAGGATCTGCATTGTGACCAAAGAGGGCATCAGGGAGGAGACCATTCCCCTGAGGAAGGACTGA

Related Sequences

XP_004868911.1 Protein

Psmb1 PREDICTED: proteasome subunit beta type-1 [Heterocephalus glaber]

Length: 240 aa      View alignments
>XP_004868911.1
MLSTSLYSGSGRELGVEPYSAVAPLQHRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRNSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETIPLRKD