Sequence details NCBI ID: XM_004868824.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Lrrc1
Gene Name leucine rich repeat containing 1
Entrez Gene ID 101721247

Database interlinks

Part of NW_004624850.1 (Scaffold)

For more information consult the page for NW_004624850.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LRRC1 ENSCPOG00000003406 (Guinea pig)

Gene Details

leucine rich repeat containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003079, Guinea pig)

Protein Percentage 87.02%
CDS Percentage 84.67%
Ka/Ks Ratio 0.19562 (Ka = 0.0914, Ks = 0.4672)

LRRC1 ENSG00000137269 (Human)

Gene Details

leucine rich repeat containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000359925, Human)

Protein Percentage 94.27%
CDS Percentage 90.71%
Ka/Ks Ratio 0.10045 (Ka = 0.0298, Ks = 0.2968)

Lrrc1 ENSMUSG00000032352 (Mouse)

Gene Details

leucine rich repeat containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000109048, Mouse)

Protein Percentage 90.81%
CDS Percentage 85.94%
Ka/Ks Ratio 0.08972 (Ka = 0.0498, Ks = 0.5546)

Lrrc1 ENSRNOG00000005970 (Rat)

Gene Details

leucine rich repeat containing 1 (Lrrc1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000007867, Rat)

Protein Percentage 91.41%
CDS Percentage 86.2%
Ka/Ks Ratio 0.09045 (Ka = 0.0482, Ks = 0.5331)

Genome Location

Sequence Coding sequence

Length: 1575 bp    Location: 1105926..1232590   Strand: +
Raw sequence   
>XM_004868824.1
ATGTTCCACTGCATCCCCCTGTGGCGGTGCAACCGTCATGTGGAGAGCCTGGACCGGCGTCACTGCTCGCTGGTGTGCGTGCCCGAGGAGGTGTACCGCTACGCGCGCAGCCTGGAGGAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCGAGCAATTTTTCCAGCTAGTCAAATTACGAAAGCTTGGACTTAGTGATAATGAAATTCAGCGGCTCCCTCCAGAAATCGCAAACTTCATGCAGCTGGTGGAACTGGATGTGTCTAGAAATGACATCCCGGAGATTCCAGAGAGCATCTCATTCTGTAAAGCACTGCAGATAGCCGACTTCAGCGGGAACCCACTGACCAGGTTGCCAGAAAGCTTTCCTGAATTACAGAATTTAACATGTCTCTCTGTAAATGACATTTCACTGCAGTCTCTGCCTGAGAATATTGGCAATCTTTATAACCTGGCATCACTGGAACTGAGAGAGAACCTTCTTACATATCTTCCTGACTCTCTTACCCAGCTGCAGAGACTAGAAGAACTTGATTTAGGAAACAATGATATATATAATTTGCCTAAATCAATCGGAGCTCTCTTACATCTAAAAGATCTCTGGTTGGATGGAAATCAGCTATCAGAATTACCTCAGGAAATAGGAAATCTGAAGAACTTGCTGTGCTTAGATGTCTCTGAAAATAGGTTGGAAAGACTTCCTGAAGAAATCAGTGGCCTGACTTCATTAACAGATTTAGTAATCTCCCAGAACTTACTGGAAACAATTCCAGATGGCATCGGAAAACTGAAGAAGCTGTCTATCTTGAAGGTGGATCAGAACAGACTCACACACTTGCCTGAAGCTCTTGGGGACTGTGAGAACCTCACAGAGCTAGTTCTCACAGAGAATCGGCTCCTGACGTTACCTAAGAGCGTTGGAAAACTTAAGAAGTTGAGCAACTTGAATGCAGACAGAAATAAATTAGTGTCTTTACCAAAAGAGATTGGCGGGTGCTGCAGCCTCACTGTGTTCTGCGTGCGCAACAACAGACTGACTTGGATACCTGCTGAGGTGTCACAGGCGACAGAACTTCATGTCCTAGATGTGGCAGGGAACAGGTTGTCACATCTGCCGTTATCATTGACCACCTTGAAGCTGAAGGCTCTGTGGTTGTCTGACAACCAGTCCCAGCCTCTGCTCACCTTCCAGACAGATACAGACCGCACCACAGGAGAGAAGATCCTGACTTGTGTCTTACTTCCTCAACTGCCTTCAGAACCTACCTGTCAAGAGAACCTGCCGCGTTGTGGTGCCCTGGAGAGCCTGGTAAATGACGTCTCCAATGATTCGTGGAGTGAGCGTGCAGTACACAGAGTTAGTGCCATCCGATTTTTGGATGATGAAAAAGATGAAGAGGACAATGAAACGAGAACGCTTCTAAGGCGAGCCACTCCGCACCCAGGGGAGCTGAAGAACATGAAAAAGACAGTGGAGAATTTACGGAATGATATGAATGCTGCTAAAGGACTGGATTCGAACAAAAATGAGGTCAATCATGCTGTTGACCGAGTGACCACTTCTGTGTAG

Related Sequences

XP_004868881.1 Protein

Lrrc1 PREDICTED: leucine-rich repeat-containing protein 1 [Heterocephalus glaber]

Length: 524 aa      
>XP_004868881.1
MFHCIPLWRCNRHVESLDRRHCSLVCVPEEVYRYARSLEELLLDANQLRELPEQFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDVSRNDIPEIPESISFCKALQIADFSGNPLTRLPESFPELQNLTCLSVNDISLQSLPENIGNLYNLASLELRENLLTYLPDSLTQLQRLEELDLGNNDIYNLPKSIGALLHLKDLWLDGNQLSELPQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTDLVISQNLLETIPDGIGKLKKLSILKVDQNRLTHLPEALGDCENLTELVLTENRLLTLPKSVGKLKKLSNLNADRNKLVSLPKEIGGCCSLTVFCVRNNRLTWIPAEVSQATELHVLDVAGNRLSHLPLSLTTLKLKALWLSDNQSQPLLTFQTDTDRTTGEKILTCVLLPQLPSEPTCQENLPRCGALESLVNDVSNDSWSERAVHRVSAIRFLDDEKDEEDNETRTLLRRATPHPGELKNMKKTVENLRNDMNAAKGLDSNKNEVNHAVDRVTTSV