Sequence details NCBI ID: XM_004868710.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Rai1
Gene Name retinoic acid induced 1, transcript variant X9
Entrez Gene ID 101702883

Database interlinks

Part of NW_004624849.1 (Scaffold)

For more information consult the page for NW_004624849.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

RAI1 ENSCPOG00000003624 (Guinea pig)

Gene Details

retinoic acid induced 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003272, Guinea pig)

Protein Percentage 92.97%
CDS Percentage 92.3%
Ka/Ks Ratio 0.17484 (Ka = 0.0389, Ks = 0.2225)

RAI1 ENSG00000108557 (Human)

Gene Details

retinoic acid induced 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000323074, Human)

Protein Percentage 90.06%
CDS Percentage 87.38%
Ka/Ks Ratio 0.09076 (Ka = 0.049, Ks = 0.5398)

Rai1 ENSMUSG00000062115 (Mouse)

Gene Details

retinoic acid induced 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000070896, Mouse)

Protein Percentage 83.73%
CDS Percentage 82.77%
Ka/Ks Ratio 0.13552 (Ka = 0.0902, Ks = 0.6659)

Rai1 ENSRNOG00000021537 (Rat)

Gene Details

retinoic acid induced 1 (Rai1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000030733, Rat)

Protein Percentage 84.21%
CDS Percentage 83.11%
Ka/Ks Ratio 0.14224 (Ka = 0.0881, Ks = 0.6191)

Genome Location

Sequence Coding sequence

Length: 5610 bp    Location: 3740848..3631362   Strand: -
Raw sequence   
>XM_004868710.1
ATGCAGTCTTTTAGAGAAAGGTGTGGTTTCCATGGCAAACAACAGAACTACCCGCAGACCTCACAGGAAACATCGCGCCTGGAGAATTACAGGCAGCCGAGTCAGGCTGGGCTGAGCTGTGACCGGCAGCGGCTGCTTGCAAAGGACTATTATAACCCGCAGCATTACCCAGGCTATGAGGGTGGCACCAGCACACCCTCTGGCACAGGGGCTGTAGTGGCCACCGAGAAGTACCACCGAGGCAGCAAGGCCCTGCCCTCACAGCAGCCCCTGCAGGGGAGGTCAGCTTTCCCTGGCTATGGCAGTGTCCAGGACAGCAGCCCTTACCCGGGACGGTACTCTGGCGAGGAGAGCCTGCAGGCCTGGGGTGCCCCACAGCCACCACCTCCTCAGCCACAGCCCCTGCCAGGGGGTGTGGGCAAGTATGACGAGAACTTGATGAAAAAGACCGCGGTGCCCCCTGGCAGGCAGTACGCAGAGCAGGGCACCCAGCTTCCCTTCCGGACTCACTCCCTGCATGTCCAGCAGCCACCGCCACCGCCACCCCAGCAGCTGCCACAGCCCCAGCAGCCCCTGGTGTATCCCAAACTTCAAAGGCAGAAACTACAGAATGACATTGCCTCACCCTTGCCTTTTCCCCAGGGTGGCCACTTCCCCCAGCACTCCCAGTCCTTTCCTGCCTCTTCTACTTACTCTTCCTCTGTCCAGGGTGGCACACAGGGGGCCCACTCTTACAAGAGTTGCACAGCACCATCTACCCAGCCCCATGACAGGCCGCTCACCGCCAATGCCAGCCTGGCCCCAGGGCAGCGGGTCCCAAACCTTCATGCCTATCAGTCAGGCCGCCTTGGTTATGACCAGCAACAGCAACAGCAGCAACAACAGCAGCAGCAGCAAACTCTTCAGAGCCGGCACCATGCCCAGGAAACCCTCCATTACCAAAACCTCGCTAAATACCAACACTATGGGCAGCAAGGCCAGGGCTACTGCCAGCCAGATGCAGCTGTCAGAACGCCGGAGCAGTACTACCAAACCTTCAGTCCTAGCTCCAGCCACTCCCCTGCCCGCTCTGTGGGACGCTCACCATCTTACAGCTCCACTCCATCGCCCCTGATGCCCAACCTGGAGAGCTTCCCGTACAGCCAGCAGCCGCTCAGCACTGGAGCCTTTCCCACAGGGGTCACTGACCACAGTCACTTCATGCCCCTGCTCAACCCCTCCCCAACAGATGCTGCCAGCTCTGTGGACACCCAGGCCAGCAACTGCAAGCCCATGCAGAAAGACAAGATCCCTGAAAACCTACTGTCAGACCTCAGCCTTCAGAGCCTCACGGCTCTGACCTCACAGGTAGAGAACATCTCTAACACGGTGCAGCAGCTTCTGCTGTCCAAGGCGGCTGTACCACAGAAGAAAGGGGTCAAGAACCTCGTGTCTCGGACCCCTGAGCAGCACAAGAGCCAGCACTGCAGCCCTGAGGGCAGTGGCTACTCAGCCGAGCCGGCAGGCACACCACTGTCTGAGCCACTGAGCAGCACCCCACAGTCCACCCATGCTGAGCCACAGGAGGCCGACTACCTGAGTGGCTCTGAGGACCCTCTGGAGAGAAGCTTCCTCTACTGCAGCCAGCCCCGAGGCAGCCCTGCCAGGGTCAACAGTAACTCAAAGGCCAAGCCTGAGTCTGTGTCCACCTGTTCTGTGACCTCACCCGATGACATGTCCACCAAATCTGATGATTCCTTCCAGAGCTTGCACAGTACTCTGCCACTGGACAGCTTCTCCAAGTTCGTGACAGGTGAGCGGGACTGCCCACGGCTGCTGCTCAGTGCCCTGGCACAGGAGGACCTGGCCTCTGAGATCTTGGGGCTGCAGGAAGCCATTGGCGAGAAGGCTGACAAAGCCTGGGCTGAGGCACCCAGCTTGGCCAAGGACCCCAGCAAGGCTCCTTTCTCACTGGAGAACCACAGCACCTGCCTGGACTCTGTAGCCAAGAATGCATGGCCACGCCCTGGGGAGACGGAGAACCTGTCTGATTCCTTGCAGCTGGACAAGGGTAGCAACACCAAAGACTTCAGCCCAGGGCTCTTTGAAGACCCTTCTGTGGCCTTTGCCAGCCCTGATCTCAAGAAGTCAACTGCCCCCCTCTCCTTTGGCACCAAGCCCACCCTTGGGGCTCCCACTCCAGACCCCACAACAACAGCTTTTGACTGCTTTCCAGATACAACTACTGCCAGCTCAGCAGACAGTGCCAACCCCTTTGCATGGCCAGAGGAGAACCTGGGCGATGCTTGTCCTCGGTGGGGACTGCACCCTGGTGAGCTTGCCAAAGGCCTGGAGCAGGGTGGAAAGGCCTCAGATGGTGTGGGCAAAGGGGACAGCCACGAGGCTTCGGCCTGCCTGGGCTTCCAGGAAGAGGACCCCCCTCGGGAAAAGGCAGTTGCACTGCCCAGGGACTTCAAGCAGGAGGAGGCGGGTGGGGTGAAGGAGGAGGTGGGTGGGATGTTACAGTGCCCCAATGATGTGAGTAAGGCTGACCGGTGGCTGGAGGACAGCCGGCACTGCTGCTCTGCTGCAGATTTTGGGGACCTGCCACTGCTGCCGCCCCCAGGCAGAAAGGAGGACCTGGAGGCTGAGGAGGAGTACTCCTCCCTGTGTGAGCTACTGGGCAGCCCAGAGCAGAGGCCCAGCATGCAGGACCCACTGTCGCCGAAGGCCCCCCTCATCTGCACCAAGGAGGAAGTAGAAGAAGTATTGGACTCCAAGGCCAGCTGGGGTTCCCCATGCCACCTCTCTGGGGAGTCTGTCATCTTGCTAGGCCCCACTGTGGGTGCTGAGTCGAAGGTCCAGAGCTGGTTTGAGTCTTCCCTGTCCCACATGAAGCCAGGGGAAGAGGGTTCTGAGGGAGAGCGGGCTCCAGGCGATTCCACCACCTCAGAAGCTTCCGTGGCCCAGAAGCCAAACAAGCCAGCAGTGCCTGAGGCACCCATTGCTAAGAAAGAGCCTGTGCCCCGGGGCAAAAGTTTACGGAGCCGTCGGGTGCACCGGGGACTGCCTGAGGCTGAGGACTCCCCATGCAGGGCACCAGTGCTGCCCAAAGACCTTTTGCTCCCTGAATCCTGCACAGGGCCTCCCCAAGGACAGCTGGAAGGAGCTGGGGCCCCAGGCCGGGGCACCTCAGAAGGGATCCCCAGGATGTGTACACGCTCCCTCACAGCCCTGAGTGAACCCCGTACACCTGGACCCCCAGGCCTGACCACTACGCCTGCACACCCTGACAAACTGGGGGGCAAGCAGCGAGCTGCCTTCAAGTCAGGCAAGAGGGTAGGGAAACCTTCACCCAAGGCCGCATCCAGCCCCAGCAACCCAGCTGCCCTGCCGGTGGCCTCAGACAGCAGCCCTATGGGCTCCAAAACCAAGGAGACAGACTCGCCCAGTACTCCTAGCAAGGACCAGCGCTCCATGATCCTCCGGTCCCGCACGAAGCCCCAGGAGGTTTTCTACTCCAAGCGGCGGCGGCCTGCAGAGAGTCGGCTCCCAAACTGCCGCACCACCAAGAAGCTCCTTGCCAACAGCCACCTGCCCACCACGTTCAAGGTCTCCAGTAGCCCCCAGAAGGAGGGCAGGGTGAGCCAGCGAGCAAGGGTCCCCAAGCCCTGCACTGGGGGCAAGCTTTCTGATCAGCCTCTCCACACACTCAAAAGGAAGTCTGCCTTCATGGCACCAGTCCCCACCAAGAAGCGGAACCTGGTTTTACGGAGTAGCAGCAGCACTACCACCACCAGTAGCAATGGGGGAGATGGGAAGGAGGAGGGGGCCGAGGGCTCCTCTGCCCTCTTCAGGAGGGTGTCTTCTCCCAAAAAGACCAAGCCCAAGGGCAACAGCGAGCCCACCATGAAACCCTCACCCCCCGAGAGCCCCGATACCTGCATCAAGCTCACCTCACGGGCAGCCTTCCAGGGGGCCATGAAGACCAAGGTGCTCCCACCCCGGAAGGGTCGGGGCCTCAAGCTGGAGGCCATCGTGCAGAAGATCACCTCACCTGGCCTCAAGAAGTTCACATGCAAAGTGCCAGGGGCCCCTCCAGGGACACCTCTGAGCCCAGCCCTCCCTGAGAAGGATCGAGGTGGCCTCAAGAGTGCTGGGGGCAGCCCAGCAAGGGCAGAAGAAGGTCTGATAAGCATGGGTACTGGGCAGAAGCTCCCAGCAGCTTTGGGAGCTGACCCATTATGCAGAAATCCAGCCAGCAGGTCCTTAAAAGGCAAACTTGTGAACAGTAAGAAACTGTCCTCTGCTGACTGTTTCAAAACTGAGGCCTTCACCTCCCCGGAGGCCCTACAGCCTGGGGCAACTGCCCTGGCGCCTAAGAAGAGGAGCCGGAAAGGCAGGGCTGGAGGCCTCGGACTCCCCAAAGGCCCCCTGGAGAAGCGGCCCTACCTTGGTCCAACTCTGCTCCTCAGTCCCAGAGACAGGGCCAGCAGCACACAGGGGGCTGGCGAGGACAACTCTGGTGGAGGCAAGAAGCCAAAGACAGAGGAGCTGGGCCTGGCTTCCCAGCCCTCTGAGGGCCGGTCCTGCCAGCCCCAGACAAGGGCACAGAAGCAGCCAGGCCATGCCAACTACAGCAGCTATTCCAAGCGGAAGCGCCTCACCCGGGGCCGGGCCAAAAACACCAATACTTCACCCTGTAAGGGGCGTGCCAAGCGGAGGCGGCAGCAGCAGGTGCTCCCCCTGGATCCTGCAGAGCCTGAAATCCGCCTCAAGTACATTTCCTCTTGCAAGCGACTGAGGGCAGACAGCCGGACCCCTGCCTTCTCGCCCTTTGTGCGGGTGGAGAAGCGAGATGCATTCACCACTGTATGCACTGTTGTTAACTCCCCGGGGGATGAGCCCAAGCCCCACAGGAAGCCTTCATCCTCCACCTCCTCTTCCTCATCTTCATCCTCCTTCTTCTTGGATGTGGCTGGGGCTTCCCTGACCACACTCCCTGGAGGTTCCATCCTGCAGTCACGGCCCTCCCTGCCTCTCTCCTCTATGATGCACCTGGGGCCTGTGGTTTCCAAGGCCCTGAGTACCTCTTGCCTCGTTTGCTGCCTCTGCCAAAACCCAGCCAACTTCAAGGACCTCGGAGACCTCTGTGGACCCTACTACCCTGAACACTGCCTCCCCAAAAAGAAGCCAAAACTCAAGGAGAAGGTGCGTCCAGAAGGCACCTGTGAGGAGGCCCCGTTGCCCCTCGAGAGAACACTCAAGGGCCTTGAGTGTGTGGCTGCCACCCCTGCTGCTGCCGCCACTGGTTCCGGGAAACCCCCCAGACTTGATGCCCCAGCTGACCCAGCCAAGCAGGGCTCACTGCGCACCAGTGCCCGTGGCCTGTCCCGGCGGCTGCAGAGTTGCTACTGTTGTGATGGCCGGGGTGACGGGGGTGACGAGATGGCACCAGTCGACAAGAGCCGCAAGCATGAGTGCAGCAAGGAGGCCCCCTCAGAGCCTGTTGGGGACACCCAGGAGCACTGGGTACACGAGGCCTGTGCAGTGTGGACCGGCGGGGTCTACCTGGTGGCCGGGAAGCTCTTTGGGCTACAGGAGGCCATGAAAGTGGCTGTGGACATGTGA

Related Sequences

XP_004868767.1 Protein

Rai1 PREDICTED: retinoic acid-induced protein 1 isoform X9 [Heterocephalus glaber]

Length: 1869 aa      View alignments
>XP_004868767.1
MQSFRERCGFHGKQQNYPQTSQETSRLENYRQPSQAGLSCDRQRLLAKDYYNPQHYPGYEGGTSTPSGTGAVVATEKYHRGSKALPSQQPLQGRSAFPGYGSVQDSSPYPGRYSGEESLQAWGAPQPPPPQPQPLPGGVGKYDENLMKKTAVPPGRQYAEQGTQLPFRTHSLHVQQPPPPPPQQLPQPQQPLVYPKLQRQKLQNDIASPLPFPQGGHFPQHSQSFPASSTYSSSVQGGTQGAHSYKSCTAPSTQPHDRPLTANASLAPGQRVPNLHAYQSGRLGYDQQQQQQQQQQQQQTLQSRHHAQETLHYQNLAKYQHYGQQGQGYCQPDAAVRTPEQYYQTFSPSSSHSPARSVGRSPSYSSTPSPLMPNLESFPYSQQPLSTGAFPTGVTDHSHFMPLLNPSPTDAASSVDTQASNCKPMQKDKIPENLLSDLSLQSLTALTSQVENISNTVQQLLLSKAAVPQKKGVKNLVSRTPEQHKSQHCSPEGSGYSAEPAGTPLSEPLSSTPQSTHAEPQEADYLSGSEDPLERSFLYCSQPRGSPARVNSNSKAKPESVSTCSVTSPDDMSTKSDDSFQSLHSTLPLDSFSKFVTGERDCPRLLLSALAQEDLASEILGLQEAIGEKADKAWAEAPSLAKDPSKAPFSLENHSTCLDSVAKNAWPRPGETENLSDSLQLDKGSNTKDFSPGLFEDPSVAFASPDLKKSTAPLSFGTKPTLGAPTPDPTTTAFDCFPDTTTASSADSANPFAWPEENLGDACPRWGLHPGELAKGLEQGGKASDGVGKGDSHEASACLGFQEEDPPREKAVALPRDFKQEEAGGVKEEVGGMLQCPNDVSKADRWLEDSRHCCSAADFGDLPLLPPPGRKEDLEAEEEYSSLCELLGSPEQRPSMQDPLSPKAPLICTKEEVEEVLDSKASWGSPCHLSGESVILLGPTVGAESKVQSWFESSLSHMKPGEEGSEGERAPGDSTTSEASVAQKPNKPAVPEAPIAKKEPVPRGKSLRSRRVHRGLPEAEDSPCRAPVLPKDLLLPESCTGPPQGQLEGAGAPGRGTSEGIPRMCTRSLTALSEPRTPGPPGLTTTPAHPDKLGGKQRAAFKSGKRVGKPSPKAASSPSNPAALPVASDSSPMGSKTKETDSPSTPSKDQRSMILRSRTKPQEVFYSKRRRPAESRLPNCRTTKKLLANSHLPTTFKVSSSPQKEGRVSQRARVPKPCTGGKLSDQPLHTLKRKSAFMAPVPTKKRNLVLRSSSSTTTTSSNGGDGKEEGAEGSSALFRRVSSPKKTKPKGNSEPTMKPSPPESPDTCIKLTSRAAFQGAMKTKVLPPRKGRGLKLEAIVQKITSPGLKKFTCKVPGAPPGTPLSPALPEKDRGGLKSAGGSPARAEEGLISMGTGQKLPAALGADPLCRNPASRSLKGKLVNSKKLSSADCFKTEAFTSPEALQPGATALAPKKRSRKGRAGGLGLPKGPLEKRPYLGPTLLLSPRDRASSTQGAGEDNSGGGKKPKTEELGLASQPSEGRSCQPQTRAQKQPGHANYSSYSKRKRLTRGRAKNTNTSPCKGRAKRRRQQQVLPLDPAEPEIRLKYISSCKRLRADSRTPAFSPFVRVEKRDAFTTVCTVVNSPGDEPKPHRKPSSSTSSSSSSSSFFLDVAGASLTTLPGGSILQSRPSLPLSSMMHLGPVVSKALSTSCLVCCLCQNPANFKDLGDLCGPYYPEHCLPKKKPKLKEKVRPEGTCEEAPLPLERTLKGLECVAATPAAAATGSGKPPRLDAPADPAKQGSLRTSARGLSRRLQSCYCCDGRGDGGDEMAPVDKSRKHECSKEAPSEPVGDTQEHWVHEACAVWTGGVYLVAGKLFGLQEAMKVAVDM