Details from NCBI annotation

Gene Symbol Lrrc48
Gene Name leucine rich repeat containing 48
Entrez Gene ID 101701002

Database interlinks

Part of NW_004624849.1 (Scaffold)

For more information consult the page for NW_004624849.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LRRC48 ENSCPOG00000003628 (Guinea pig)

Gene Details

leucine rich repeat containing 48

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003276, Guinea pig)

Protein Percentage 90.6%
CDS Percentage 90.85%
Ka/Ks Ratio 0.16695 (Ka = 0.0491, Ks = 0.294)

LRRC48 ENSG00000171962 (Human)

Gene Details

leucine rich repeat containing 48

External Links

Gene Match (Ensembl Protein ID: ENSP00000326870, Human)

Protein Percentage 83.52%
CDS Percentage 84.42%
Ka/Ks Ratio 0.11914 (Ka = 0.0955, Ks = 0.8013)

Lrrc48 ENSMUSG00000056598 (Mouse)

Gene Details

leucine rich repeat containing 48

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000104363, Mouse)

Protein Percentage 81.23%
CDS Percentage 83.4%
Ka/Ks Ratio 0.16129 (Ka = 0.1114, Ks = 0.6908)

Lrrc48 ENSRNOG00000021303 (Rat)

Gene Details

leucine rich repeat containing 48 (Lrrc48), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000038778, Rat)

Protein Percentage 80.84%
CDS Percentage 82.89%
Ka/Ks Ratio 0.15915 (Ka = 0.116, Ks = 0.7288)

Genome Location

Sequence Coding sequence

Length: 1593 bp    Location: 3466120..3429932   Strand: -
>XM_004868695.1
ATGCTATCATCAGGGAAGATGAACCGGATCTATGACTCGGTGGAGCCAAGAGTGATGGACGACGACATACTCAAGCTGGCTGTGGGGGAGCAGGGTCCCCAGGAGGAGGCTGGGCAGCTGGCCAAGCAGGAAGACATCCTCTTCAAAGATGTCCTGTCTCTGCAGCTGGACTTCCAGAACATCCTCCGCATAGACAACCTCTGGCAGTTTGAGAACCTGCAGAAGCTGCAGCTGGACAACAACATCATTGAGAGGATAGAAGGCCTGGAGAACCTCACACAGCTGGTCTGGCTGGATCTGTCCTTCAACAACATCAAGGTTATCGAGGGACTGGATACCCTGGTCAACCTGGAGGACCTGAGTTTGTTCAACAATAGGATCTCCAAGATTGACTCTCTAGATGCACTGGTCAAGCTACAAGTCCTGTCACTGGGCAACAACCAGATTGACAACATGTTGAATATCATCTACCTTCGGCAGTTCAAGTGCCTGCGGACACTCAGCCTCTCAGGGAACCCCATTACTCAGACAGAGGCTTACAAGATGTTCATCTACGCCCACCTTCCTGACCTTGTGTACCTGGACTTCAGACGCATCGATGACCACATGGGAAAGCTGGCAGAAATGAAGTACCAGTACAGCATTGATGAGCTGAAGCACCAGGAGCACCTGAGGCAGGCCCAGCTGGAGGAGGAACAGGCCTGGCGGGTGAAACTGGAGGAATACAAGATGGCGTTTGTCGAACACCTGAACGGTTCCTTCCTATTTGACAGCATGTACGCTGAAGACGTGGAGGGCAGCAAGCTGTCCTGTCTCCCCATTGTGAGCAAGCTCCTCGAACCATTCACCTACAAGGACAAATTTGTCATCATCTGCCTGAATATTTTTGATTATGGCCTGAAACAGCAGGAGAAACGGAAACTGGAGCTGAATACCTTCAATGAGTGTGTCCAGGAGGCCATCCAGGAAAACCAGGAACAGGGCAAACTCAGGATCGCCAGATTTGAGGAGATGCACCTGCTGAATCTAAGTGCCATTCGAGAAGAGTCTGAACTGCTCATCATCGAGAAAAAGATAGTGGAGTGCAGTGAGGACATCTCAGCGCTCTTCAACGTGCTCATGACACTGGAGATGCAGCTGGTAGAACAGCTAGAGGAGGCCATAAACATGTTTGAAAGGAACATCACTGACATGGTGGACATGTTTATCGAAAACGTCCAGAGCCTGATGGCTCAGTGTCGAGACCTGGAGAACCACCACCATGAGAAACTCTTAGAGATCTCTATCAGCACCCTTGAGAAAATCATCAAAGGCGAGCTGGATGAGGAGCTGCCTGACGACGTGCGCGCACTTTTTGCTGACAAAGACACAATTGTAAATGCTGTTGGGGCATCACATGACATCCACCTCCTGAAGATTGACAATAGGGAAGATGAGCTGGTGACCAGGATCAATTCTTGGTGTACACATTTAGTAGACAAGATTCACAAGGATGAGGTCATGAGGAATCGCAAGCGAGTGAAAGAGATCAGTCAATACATCGACCACATGCAGAGTGAGCTGGACAACCTGGAATGCGGTGATATGGATTAG

Related Sequences

XP_004868752.1 Protein

Lrrc48 PREDICTED: leucine-rich repeat-containing protein 48 [Heterocephalus glaber]

Length: 530 aa      View alignments
>XP_004868752.1
MLSSGKMNRIYDSVEPRVMDDDILKLAVGEQGPQEEAGQLAKQEDILFKDVLSLQLDFQNILRIDNLWQFENLQKLQLDNNIIERIEGLENLTQLVWLDLSFNNIKVIEGLDTLVNLEDLSLFNNRISKIDSLDALVKLQVLSLGNNQIDNMLNIIYLRQFKCLRTLSLSGNPITQTEAYKMFIYAHLPDLVYLDFRRIDDHMGKLAEMKYQYSIDELKHQEHLRQAQLEEEQAWRVKLEEYKMAFVEHLNGSFLFDSMYAEDVEGSKLSCLPIVSKLLEPFTYKDKFVIICLNIFDYGLKQQEKRKLELNTFNECVQEAIQENQEQGKLRIARFEEMHLLNLSAIREESELLIIEKKIVECSEDISALFNVLMTLEMQLVEQLEEAINMFERNITDMVDMFIENVQSLMAQCRDLENHHHEKLLEISISTLEKIIKGELDEELPDDVRALFADKDTIVNAVGASHDIHLLKIDNREDELVTRINSWCTHLVDKIHKDEVMRNRKRVKEISQYIDHMQSELDNLECGDMD