Sequence details NCBI ID: XM_004868636.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Scn4a
Gene Name sodium channel, voltage-gated, type IV, alpha subunit
Entrez Gene ID 101713228

Database interlinks

Part of NW_004624849.1 (Scaffold)

For more information consult the page for NW_004624849.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SCN4A ENSCPOG00000008540 (Guinea pig)

Gene Details

sodium channel, voltage-gated, type IV, alpha subunit

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000007677, Guinea pig)

Protein Percentage 95.8%
CDS Percentage 93.51%
Ka/Ks Ratio 0.06689 (Ka = 0.0209, Ks = 0.3127)

SCN4A ENSG00000007314 (Human)

Gene Details

sodium channel, voltage-gated, type IV, alpha subunit

External Links

Gene Match (Ensembl Protein ID: ENSP00000396320, Human)

Protein Percentage 93.03%
CDS Percentage 90.3%
Ka/Ks Ratio 0.05323 (Ka = 0.0329, Ks = 0.6187)

Scn4a ENSMUSG00000001027 (Mouse)

Gene Details

sodium channel, voltage-gated, type IV, alpha

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000021056, Mouse)

Protein Percentage 93.03%
CDS Percentage 89.1%
Ka/Ks Ratio 0.05024 (Ka = 0.0338, Ks = 0.6726)

Scn4a ENSRNOG00000012134 (Rat)

Gene Details

sodium channel, voltage-gated, type IV, alpha subunit (Scn4a), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000016841, Rat)

Protein Percentage 92.69%
CDS Percentage 89.12%
Ka/Ks Ratio 0.05247 (Ka = 0.0356, Ks = 0.6788)

Genome Location

Sequence Coding sequence

Length: 5478 bp    Location: 1468586..1439785   Strand: -
Raw sequence   
>XM_004868636.1
ATGGCCCGCTCATCTCTGCCCACCCTACCCTTGGGCCCCCATTGCCTACGCCCCTTCACCCGGGAGTCCCTGGCAGCCATAGAACAGCGGGCAGTGGAGGAGGAGGCCCGGCTGCTGCGGAATAAACAGATGGAGATTGAGGATCCCGAACAGAAGCCTCGAAGTGACCTGGAGGCCGGCAAGAACCTGCCCCTTATCTTTGGGGACCCCCCACCAGAAGTCATCGGCATTCCTCTGGAGGACATAGACCCCTACTACAATGACAAGAAGACCTTCATCGTGCTCAACAAGGGCAAGTCCATCTTCCGCTTCTCTGCCACGCCTGCCCTCTACATGCTGAGCCCATTCAGCATCATCAGGCGGAGTGCCATCAAGGTGCTCATCCACTCGCTGTTCAGCATGTTCATCATGATCACCATCTTGACCAACTGTGTGTTCATGACCATGAGCGACCCACCTCCCTGGTCCAAGAATGTGGAGTACACCTTCACAGGGATCTATACCTTTGAGTCCCTCATCAAGATGCTGGCCCGAGGCTTCTGCATCGACAACTTCACATTCCTCCGAGACCCCTGGAACTGGCTGGACTTCAGTGTCATCCTGATGGCGTATGTGACAGAGTTTGTGGACTTGGGAAACATCTCAGCCCTGAGGACCTTCCGGGTGCTTCGAGCCCTAAAAACCATCACGGTCATCCCAGGGCTGAAGACAATTGTGGGGGCCCTGATCCAGTCGGTGAAAAAGCTATCGGATGTGATGATCCTCACTGTCTTCTGTCTGAGCGTCTTTGCCCTGGTGGGGCTGCAGCTCTTCATGGGAAACCTTAGGCAGAAGTGCATCCGCTGGCCCCCTCCCTTCAATGATACCAAGGCCACATGGTCTGGCAACGACACGTGGTATGGCAACGACACGTGGTATGGCAACGACACGTGGAGCCACATGAGCTGGGCCAACAACTATACCTTTGATTGGGATGCCTATATCAATGATGAAGGGAACTACTATTTCCTGGAGGGTGCCAATGATGCTCTGCTCTGTGGGAACAGCAGTGATGCTGGGCACTGTCCCGAGGGTTATGAGTGCATGAAGGCCGGGCGCAACCCCAACTATGGCTACACCAGCTACGACACCTTCAGCTGGGCCTTCCTGGCTCTCTTCCGCCTCATGACACAGGATTACTGGGAGAACCTCTTCCAGCTGACTCTTCGAGCAGCCGGCAAGACCTACATGATCTTCTTCGTGGTCATCATCTTTCTGGGCTCCTTCTATCTCATCAATCTGATCCTGGCAGTAGTGGCCATGGCGTATGCTGAGCAGAATGAGGCCACCTTGGCTGAAGATCAGGAGAAAGAGGAGGAGTTTCAGCAGATGCTTGAGAAATTCAAAAAACAACAGGAGGAGCTGGAGAAGGCCAAGGCTGCCCAGGCTCTGGAAGGTGGGGAGGCAGATGGAGACCCAGCCCACCGTAAAGACTGCAATGGCAGCCTGGACACATCTGGGGAGAAGGGGCCCCCAAGGCTGAGCTGCAGTGCAGACAGTGCCATCTCAGATGCTATGGAGGAGCTGGAAGAGGCCCACCAGAAGTGCCCACCGTGGTGGTACAAGTGTGCGCACAAAGTGCTCATATGGAACTGCTGCACACCATGGGTGAAGTTCAAACATATCATCTACCTGATTGTCATGGACCCCTTCGTGGACCTGGGCATCACCATCTGCATCGTGCTCAACACCCTCTTCATGGCCATGGAGCATTACCCCATGACCGAGCACTTTGACAACGTGCTCTCCGTGGGCAATCTGGTCTTCACGGGCATCTTTACAGCCGAGATGGTGCTGAAGCTGATCGCCTTGGACCCCTATGAGTATTTCCAGCAGGGCTGGAACATCTTCGACAGTATCATTGTCACCCTCAGCCTGGTGGAGCTGGGCCTGGCCAACGTGCAGGGACTGTCTGTGCTCCGCTCCTTCCGTCTGCTGCGAGTCTTCAAACTGGCTAAGTCATGGCCAACGCTCAACATGCTCATCAAGATCATCGGCAACTCAGTGGGGGCACTGGGCAACCTGACGCTGGTGCTGGCCATCATCGTGTTCATCTTCGCAGTGGTGGGCATGCAGCTGTTCGGCAAGAGCTACAAGGAGTGCGTGTGTAAGATCGCCTCAGACTGCAGCCTGCCTCGCTGGCACATGCACGATTTCTTCCACTCCTTCCTCATCATCTTCCGAATCCTGTGTGGGGAGTGGATCGAGACCATGTGGGACTGCATGGAGGTGGCTGGCCAGCCCATGTGCCTCACCGTCTTCCTCATGGTCATGGTCATCGGCAACCTGGTGGTCCTGAACTTGTTCCTGGCCCTCCTGCTGAGCTCCTTCAGTGCCGACAGCCTGGCAGCCTCAGATGAGGATGGCGAGATGAACAACCTGCAGATTGCCATCGGGCGCATCAAGTGGGGCATCGGCTTTGCTAAGGCCTTCCTCTTGGGGCTGCTGCATGGCAAAATCCTGACGCCCAAGGAGATAATGCTCACCCTTGGGGAGCCCGGGGGTTCCGGGGAGGCTGGAGAGGTTGGGGACAGTGCCCCCAAGGACAAAAAGAAGGAACCCCCCCCTGAGGAAGAGGACAAGGACCTGAAGGACAATCACATCCTGAACCATGTGGGCCTGCCTCACGGCCCTCCCTCCAGCATTGAGCTGGACCACCTCAATTTCATCAACAACCCCTACCTGACCATCCAGGTGCCCATCGCCTCCGAGGAGTCCGACCTAGAGATGCCAACTGAGGAGGAAACTGACACATTCTCTGAGCCCGAGGATGTCAAGAAACTGCCGCAGCCCCTCTACGATGGGAACTCCTCCGTCTGCAGCACAGCTGACTACAAGCCCCCAGAGGAGGACCCCGAGGAGCAGGCTGAGGAGAACCCCGAGGGAGAGCAGCCTGAGGAGTGCTTCACAGAACCCTGTGTGCAGCGCTTCCCCTGCCTCTATGTGGACATCTCTCAGGACCGTGGGAAGATGTGGTGGACTCTTCGCAGGGCCTGCTTCAAGATTGTTGAGCACAACTGGTTCGAGACCTTCATTGTCTTCATGATCCTGCTTAGCAGTGGGGCCCTGGCCTTTGAAGATATCTATATCGAGCAGCGGCCAGTCATCCGCACCATCCTAGAATACGCTGACAAGATCTTCACTTACATTTTCATCATGGAGATGCTGCTCAAATGGGTGGCATATGGCTTCAAAGTGTACTTCACCAACGCCTGGTGCTGGCTCGACTTCCTCATCGTAGATGTCTCCATCATCAGCCTGGTAGCAAACTGGCTGGGCTACTCAGAGCTGGGACCCATCAAATCCCTGAGAACACTTCGGGCCCTTCGTCCCCTGAGGGCACTGTCTCGATTCGAGGGCATGAGGGTGGTGGTGAATGCCCTCCTGGGAGCCATCCCCTCCATCATGAATGTGCTGCTTGTCTGCCTCATCTTCTGGCTCATCTTCAGCATAATGGGCGTCAACTTGTTTGCTGGGAAGTTCTACCACTGCATCAACACTACCACCTCTGAGAGGTTCGATATCTCTGAGGTCAACAACAAGTCCGAGTGTGAGAGCCTCATGCACACAGGCCAGGTCCGCTGGCTCAACGTCAAGGTCAACTATGACAACGTGGGTCTAGGCTACCTCTCCCTCCTCCAGGTGGCCACCTTCAAGGGTTGGATGGATATCATGTATGCAGCAGTGGACTCCCGGGAGCAGGCGGACCAGCCGCAGTACGAGGTGAACCTCTACATGTATCTGTACTTTGTCATCTTCATCATCTTTGGGTCCTTCTTCACGCTCAACCTCTTCATCGGTGTCATCATCGACAACTTCAACCAGCAGAAGAAGAAGTTCGGAGGGAAAGACATCTTCATGACAGAGGAACAGAAGAAATACTACAATGCCATGAAGAAGCTTGGCTCCAAGAAGCCCCAGAAGCCGATTCCACGGCCCCAGAACAAGATCCAAGGCTTGGTGTATGACTTCGTGACAAAACAGGTATTTGACATCACCATCATGATCCTCATCTGCCTCAACATGGTCACCATGATGGTGGAGACGGATGACCAGAGCCAGCTCAAGGTGGACATCCTGTACAACATCAACATGATCTTCATCATCATCTTCACGGGGGAGTGTGTGCTCAAGATGTTTGCCCTGCGCCAGTACTATTTCACCATTGGCTGGAACATCTTTGACTTTGTGGTTGTCATCCTGTCCATTGTGGGCCTTGCACTCTCTGAGCTGATCCAGAAATACTTCGTGTCACCCACACTGTTCCGTGTGATCCGCTTGGCACGGATCGGGCGTGTCCTGCGGCTGATCCGTGGGGCCAAGGGCATCCGGACGCTGCTCTTCGCCCTCATGATGTCACTGCCCGCCCTCTTCAACATCGGCCTCCTCCTCTTCCTGGTCATGTTTATCTATTCCATCTTCGGCATGTCCAACTTTGCCTATGTGAAGAAAGAATCGGGCATTGATGACATGTTCAACTTTGAGACCTTTGGCAACAGTATCATCTGCCTCTTTGAGATCACCACATCAGCTGGCTGGGATGGGCTTCTGAACCCCATCCTCAACAGTGGGCCCCCAGATTGTGACCCCACACTAGAGAACCCTGGTACCCATATCAAGGGCAACTGCGGTAACCCATCCATTGGTATCTGCTTCTTCTGCAGCTACATCATCATCTCCTTCCTCATTGTGGTCAACATGTACATTGCCATTATCCTGGAGAACTTCAATGTGGCAACTGAGGAGAGCAGTGAGCCCCTTGGTGAGGATGACTTTGAGATGTTCTATGAAACATGGGAGAAATTCGACCCTGATGCCACACAGTTCATTGAATACAGCCGCCTCTCTGACTTTGTGGACACCCTGCAGGAGCCACTGAAGATCGCCAAGCCCAACAAAATCAAACTCATCACTCTGGACCTGCCCATGGTGCCAGGGGACAAGATCCACTGTCTGGACATCCTCTTTGCCCTGACTAAAGAGGTGCTGGGTGACTCTGGGGAGATGGATGCCCTCAAGCAGACCATGGAGGAGAAGTTCATGGCTGCCAACCCCTCTAAGGTCTCCTATGAGCCCATCACCACCACCCTGAAAAGGAAACACGAGGAGGTGTGTGCCATCAAGATCCAGAGGGCCTACCGCCGGCACCTGCTGCAGCGCTCTGTAAAGCAGGCATCCTACATGTACCGCCACAGCCAGGACGGCAGTGGGGACGGGGCCCCTGAGAAGGAGGGGCTGATCGCCAATGCCATGAGCCAGATGTATGGCCCGGAGAACGGGAAGACCAGTGTACAGGTCCAGGGGCAGAAGGAGGGCTCCACGGGGGACACCGGATCTGCCATAGGGCTCACGCCCATCAGCCCCTCAGACGCTACCCTGCCTCCCTCCCCATCACCAGGGCAGACAGTGCGCCCAGGGGTCAAAGAGTCTCTTGTGTAG

Related Sequences

XP_004868693.1 Protein

Scn4a PREDICTED: sodium channel protein type 4 subunit alpha [Heterocephalus glaber]

Length: 1825 aa      View alignments
>XP_004868693.1
MARSSLPTLPLGPHCLRPFTRESLAAIEQRAVEEEARLLRNKQMEIEDPEQKPRSDLEAGKNLPLIFGDPPPEVIGIPLEDIDPYYNDKKTFIVLNKGKSIFRFSATPALYMLSPFSIIRRSAIKVLIHSLFSMFIMITILTNCVFMTMSDPPPWSKNVEYTFTGIYTFESLIKMLARGFCIDNFTFLRDPWNWLDFSVILMAYVTEFVDLGNISALRTFRVLRALKTITVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRQKCIRWPPPFNDTKATWSGNDTWYGNDTWYGNDTWSHMSWANNYTFDWDAYINDEGNYYFLEGANDALLCGNSSDAGHCPEGYECMKAGRNPNYGYTSYDTFSWAFLALFRLMTQDYWENLFQLTLRAAGKTYMIFFVVIIFLGSFYLINLILAVVAMAYAEQNEATLAEDQEKEEEFQQMLEKFKKQQEELEKAKAAQALEGGEADGDPAHRKDCNGSLDTSGEKGPPRLSCSADSAISDAMEELEEAHQKCPPWWYKCAHKVLIWNCCTPWVKFKHIIYLIVMDPFVDLGITICIVLNTLFMAMEHYPMTEHFDNVLSVGNLVFTGIFTAEMVLKLIALDPYEYFQQGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKIASDCSLPRWHMHDFFHSFLIIFRILCGEWIETMWDCMEVAGQPMCLTVFLMVMVIGNLVVLNLFLALLLSSFSADSLAASDEDGEMNNLQIAIGRIKWGIGFAKAFLLGLLHGKILTPKEIMLTLGEPGGSGEAGEVGDSAPKDKKKEPPPEEEDKDLKDNHILNHVGLPHGPPSSIELDHLNFINNPYLTIQVPIASEESDLEMPTEEETDTFSEPEDVKKLPQPLYDGNSSVCSTADYKPPEEDPEEQAEENPEGEQPEECFTEPCVQRFPCLYVDISQDRGKMWWTLRRACFKIVEHNWFETFIVFMILLSSGALAFEDIYIEQRPVIRTILEYADKIFTYIFIMEMLLKWVAYGFKVYFTNAWCWLDFLIVDVSIISLVANWLGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCINTTTSERFDISEVNNKSECESLMHTGQVRWLNVKVNYDNVGLGYLSLLQVATFKGWMDIMYAAVDSREQADQPQYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQNKIQGLVYDFVTKQVFDITIMILICLNMVTMMVETDDQSQLKVDILYNINMIFIIIFTGECVLKMFALRQYYFTIGWNIFDFVVVILSIVGLALSELIQKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFAYVKKESGIDDMFNFETFGNSIICLFEITTSAGWDGLLNPILNSGPPDCDPTLENPGTHIKGNCGNPSIGICFFCSYIIISFLIVVNMYIAIILENFNVATEESSEPLGEDDFEMFYETWEKFDPDATQFIEYSRLSDFVDTLQEPLKIAKPNKIKLITLDLPMVPGDKIHCLDILFALTKEVLGDSGEMDALKQTMEEKFMAANPSKVSYEPITTTLKRKHEEVCAIKIQRAYRRHLLQRSVKQASYMYRHSQDGSGDGAPEKEGLIANAMSQMYGPENGKTSVQVQGQKEGSTGDTGSAIGLTPISPSDATLPPSPSPGQTVRPGVKESLV