Sequence details NCBI ID: XM_004868626.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ddx42
Gene Name DEAD (Asp-Glu-Ala-Asp) box helicase 42
Entrez Gene ID 101709728

Database interlinks

Part of NW_004624849.1 (Scaffold)

For more information consult the page for NW_004624849.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

DDX42 ENSCPOG00000005633 (Guinea pig)

Gene Details

DEAD (Asp-Glu-Ala-Asp) box helicase 42

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005078, Guinea pig)

Protein Percentage 97.64%
CDS Percentage 95.63%
Ka/Ks Ratio 0.0796 (Ka = 0.012, Ks = 0.1509)

DDX42 ENSG00000198231 (Human)

Gene Details

DEAD (Asp-Glu-Ala-Asp) box helicase 42

External Links

Gene Match (Ensembl Protein ID: ENSP00000464050, Human)

Protein Percentage 96.36%
CDS Percentage 92.85%
Ka/Ks Ratio 0.06778 (Ka = 0.0179, Ks = 0.2636)

Ddx42 ENSMUSG00000020705 (Mouse)

Gene Details

DEAD (Asp-Glu-Ala-Asp) box polypeptide 42

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000021046, Mouse)

Protein Percentage 96.23%
CDS Percentage 91.31%
Ka/Ks Ratio 0.05058 (Ka = 0.0189, Ks = 0.3738)

Ddx42 ENSRNOG00000009474 (Rat)

Gene Details

DEAD (Asp-Glu-Ala-Asp) box helicase 42 (Ddx42), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000013046, Rat)

Protein Percentage 95.8%
CDS Percentage 90.7%
Ka/Ks Ratio 0.0538 (Ka = 0.0209, Ks = 0.3886)

Genome Location

Sequence Coding sequence

Length: 2805 bp    Location: 1274440..1342149   Strand: +
Raw sequence   
>XM_004868626.1
ATGAACTGGAATAAAGGTGGCCCTGGCACTAAACGGGGATTTGGTTTTGGAGGTTTTGCCATCAGTGCTGGGAAGAAAGAAGAACCTAAACTCCCACAACAATCCCATAGTGCCTTTGGGGCAACTAGTTCTTCTTCTGGATTTGGAAAGTCAGCTCCACCACAGCTTCCTTCTTTCTACAAAATTGGATCTAAAAGGGCCAACTTTGATGAAGAAAATGCATATTTTGAAGATGAGGAAGAAGACTCTGGTAATGTTGATTTGCCTTACATTCCTGCTGAAAACTCACCTACACGTCAGCAATTCCATTCTAAGCCAGCAGATTCTGACAGTGATGATGATCCCTTGGAGGCATTTATGGCTGAAGTAGAGGATCAGGCAGCTAGAGACATGAAGAGGCTCGAAGAAAAGGACAAGGAAAGAAAAAACATAAAGGGTATTCGAGATGACATTGAAGAGGAAGATGACCAAGAAGCTTATTTTCGATACATGGCAGAAAACCCAACTGCTGGCGTGGTTCAGGAGGAGGAAGAAGACAATCTGGAATACGATAGTGATGGAAATCCAATTGCACCCTCCAAAAAAATAATTGATCCTCTTCCTCCCATTGATCATTCAGAGATTGACTACCCACCATTTGAAAAAAATTTTTACAATGAACATGAGGAGATAACCAACCTCACACCACAACAGTTAATAGATCTTCGGCATAAGCTCAATCTTCGGGTCTCTGGTGCTGCACCTCCTAGACCAGGAAGTAGTTTTGCTCATTTTGGGTTTGATGAACAACTTATGCACCAGATTCGGAAATCTGAATACACACAGCCCACTCCAATACAGTGCCAGGGTGTACCTGTGGCCTTAAGTGGTAGAGACATGATTGGTATTGCTAAAACTGGCAGTGGAAAAACTGCAGCTTTTATCTGGCCCATGTTGATTCATATAATGGACCAGAAGGAATTGGAGCCAGGTGATGGACCAATTGCAGTGATTGTGTGTCCTACAAGGGAGCTTTGCCAGCAGATCCATGCTGAATGTAAGCGGTTTGGGAAAGCATATAATCTTCGATCAGTGGCTGTATATGGAGGAGGGAGCATGTGGGAGCAGGCCAAGGCCCTTCAGGAAGGGGCAGAGATTGTTGTGTGTACCCCAGGTCGACTGATTGATCATGTGAAGAAGAAAGCTACTAATCTTCAAAGAGTCTCTTACCTTGTGTTTGATGAAGCAGATCGAATGTTTGACATGGGATTTGAGTACCAGGTTCGATCCATAGCAAGTCATGTCCGTCCTGACAGACAAACTCTCTTATTCAGTGCAACTTTTCGGAAAAAGATTGAAAAATTGGCCAGAGACATCCTGATTGACCCTATTCGAGTGGTGCAGGGAGATATTGGAGAGGCAAATGAAGATGTGACACAGATTGTGGAGATTCTCCATTCTGGGCCCAGTAAATGGAACTGGCTTACCCGGCGTCTGGTAGAGTTTACTTCTTCAGGGAGCGTCCTCCTGTTTGTTACTAAAAAAGCCAATGCTGAAGAGCTAGCCAATAACCTCAAGCAGGAGGGTCATAATCTTGGGCTGCTCCATGGAGACATGGACCAGAGTGAGAGAAACAAAGTCATTTCAGACTTTAAGAAAAAGGACATCCCAGTCCTGGTGGCCACTGATGTTGCTGCCCGTGGTCTGGACATTCCTTCAATTAAGACTGTCATTAACTATGATGTGGCACGAGACATTGATACCCATACGCATAGGATTGGCCGCACAGGAAGAGCTGGTGAGAAGGGTGTGGCCTATACCTTACTGACCCCCAAAGACAGCAATTTTGCTGGTGACCTTGTCCGGAACTTGGAAGGAGCCAACCAACATGTTTCCAAGGAACTCTTAGATCTTGCAATGCAGAATGCCTGGTTTCGGAAATCCCGCTTCAAAGGAGGGAAAGGCAAAAAGCTGAACATTGGTGGAGGAGGCCTGGGCTATAGGGAACGGCCTGGCCTAGGCTCTGAGAACACGGATCGAGGAAATAATAACAATGTGATGAGTAATTATGAGGCCTACAAGCCCTCCACAGGAGCCATGGGAGATCGCCTGACAGCAATGAAAGCAGCTTTTCAGTCACAGTATAAGAGTCATTTTGTTGCAGCCAGTTTAAGTAATCAAAAGGCTGGAAGCTCTGCTGCTGGGCCAAGTGGATGGACTAGTGCAGGAAGCTTGAATTCTGTTCCAACTAATTCAGCACAGCAGGGCCATAACAGTCCTGACAGCCCTATTGGCAGTGCTGCCAAGAGCATCCTGGGCTTTGGCAATGCTGGGAATATCAGCAGTGCTCCGGTGACATACCCTTCTGTTGGCACCCAGGGAGCCAACAACACAGCTTCGGGAAATAACACCCGAGATGGGATTGGGGGTGGCAATGGGAAAAGAGAGAGATATACTGAAAACCGGGGTGGCAGTCGTCACAGTCATGGAGAGAGTGGCAATCGGCATGGTGATAGCCCACGTCATGGAGATGGTGGTCGCCATGGAGATGGATACCGCTACCCAGAAAGCACCAGCCGTCATACTGATGGCCATCGGCATGGGGAGAACAGGCATGGAGGAAGTACAGGCCGGCATGGGGAGAGCCGGGGTACAAATGATGGTCGGAATGGAGAAAGCAAGAAAGAAGGATGTAATCGTGAAAGCAAGATGGACCCCAAGGTGGACAGCAAGATGGACAAGATGGACAGCAAGACAGATAAGACAGCTGATGGTTTTGCTGTCCCGGAGCCACCCAAACGCAAGAAGAGTCGATGGGACAGTTAG

Related Sequences

XP_004868683.1 Protein

Ddx42 PREDICTED: ATP-dependent RNA helicase DDX42 [Heterocephalus glaber]

Length: 934 aa      View alignments
>XP_004868683.1
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFYKIGSKRANFDEENAYFEDEEEDSGNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFMAEVEDQAARDMKRLEEKDKERKNIKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENTDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQKAGSSAAGPSGWTSAGSLNSVPTNSAQQGHNSPDSPIGSAAKSILGFGNAGNISSAPVTYPSVGTQGANNTASGNNTRDGIGGGNGKRERYTENRGGSRHSHGESGNRHGDSPRHGDGGRHGDGYRYPESTSRHTDGHRHGENRHGGSTGRHGESRGTNDGRNGESKKEGCNRESKMDPKVDSKMDKMDSKTDKTADGFAVPEPPKRKKSRWDS