Sequence details NCBI ID: XM_004868558.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Smarca5
Gene Name SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5, transcript variant X1
Entrez Gene ID 101715085

Database interlinks

Part of NW_004624848.1 (Scaffold)

For more information consult the page for NW_004624848.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SMARCA5 ENSCPOG00000002259 (Guinea pig)

Gene Details

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002050, Guinea pig)

Protein Percentage 98.48%
CDS Percentage 92.04%
Ka/Ks Ratio 0.01727 (Ka = 0.0068, Ks = 0.3954)

SMARCA5 ENSG00000153147 (Human)

Gene Details

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5

External Links

Gene Match (Ensembl Protein ID: ENSP00000283131, Human)

Protein Percentage 97.91%
CDS Percentage 92.07%
Ka/Ks Ratio 0.02998 (Ka = 0.0115, Ks = 0.3823)

Smarca5 ENSMUSG00000031715 (Mouse)

Gene Details

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000044361, Mouse)

Protein Percentage 97.62%
CDS Percentage 90.07%
Ka/Ks Ratio 0.02386 (Ka = 0.013, Ks = 0.5468)

Genome Location

Sequence Coding sequence

Length: 3156 bp    Location: 3610703..3570699   Strand: -
Raw sequence   
>XM_004868558.1
ATGGCGAGCGCGGCCGAGCCGCCGCCGCCCCCGCCTCCCGAGAGTGCGGCCTCCAAGCCCGCGGCCTCGGCCGGCGGCGGTAGCTCCGGCTGCAACAAAGGCGGCCCCGACGGCGTCGCGGCCCTGGCCGTTCCCGCAGCAGCCGGCGCCGACCCCACGGACGCCGAGGCGGAGGAAGTATTTGATGATGCATCACCTGGGAAGCAAAAAGAAATCCAAGAACCAGATCCTACCTATGAAGAAAAAATGCAAACTGATCGAGCAAATAGATTTGAGTATTTGTTAAAGCAGACAGAGCTGTTTGCTCATTTCATTCAGCCTGCTGCTCAGAAGACTCCAACCTCACCTTTGAAGATGAAACCGGGGCGCCCACGAATAAAAAAGGATGAGAAACAGAACTTGCTCTCAGTTGGCGATTATCGACACCGTAGAACAGAACAAGAGGAAGACGAAGAACTATTAACAGAAAGTTCCAAAGCAACCAATATTTGCACTCGATTTGAAGACTCTCCATCATATGTGAAATGGGGTAAACTGAGGGATTATCAGGTCCGAGGATTGAATTGGCTTATTTCTTTGTATGAGAATGGTATCAATGGTATCCTTGCAGATGAAATGGGCCTGGGCAAGACTCTTCAAACAATTTCTCTTCTTGGGTACATGAAGCACTATAGAAACATTCCTGGTCCTCATATGGTTTTGGTTCCTAAGTCTACATTACACAACTGGATGAGTGAATTCAAGAGATGGGTTCCAACCCTTAGATCTGTTTGTTTGATAGGAGATAAAGAACAAAGAGCTGCTTTTGTCAGAGATGTTCTGTTACCAGGAGAATGGGATGTATGTGTAACGTCCTATGAAATGCTTATTAAAGAGAAATCTGTGTTCAAAAAATTTAACTGGAGATACTTAGTTATAGATGAAGCTCACAGAATCAAAAATGAAAAATCTAAGCTGTCAGAAATAGTGAGGGAATTCAAGACTACAAATCGACTATTATTAACTGGAACACCTCTTCAAAACAACTTGCATGAGCTCTGGTCGCTCCTTAATTTTTTGTTGCCAGATGTGTTCAATTCAGCTGACGACTTTGATTCCTGGTTTGATACGAACAACTGCCTTGGGGATCAAAAGCTAGTAGAGAGGCTCCATATGGTTTTGCGTCCATTTCTGCTTCGTCGAATTAAGGCTGACGTTGAAAAAAGTTTGCCTCCAAAGAAAGAAGTAAAAATCTATGTGGGTCTCAGCAAAATGCAAAGGGAATGGTATACCCGGATATTAATGAAGGATATAGATATACTGAACTCAGCAGGGAAGATGGACAAGATGAGGCTATTGAACATCCTGATGCAGTTGAGGAAATGCTGTAATCATCCATACCTCTTTGATGGAGCTGAACCTGGTCCACCTTATACAACAGATATGCATCTAGTTACCAACAGTGGCAAAATGGTGGTGTTAGACAAGTTGCTCCCTAAATTAAAGGAACAAGGTTCACGAGTACTAATCTTCAGTCAGATGACAAGAGTATTGGACATTTTAGAAGATTACTGCATGTGGAGAAATTATGAGTACTGTAGGTTGGATGGACAGACACCACATGATGAGAGACAAGATTCAATCAATGCATACAATGAACCAAACAGCACAAAGTTTGTTTTCATGTTAAGCACACGTGCTGGTGGTCTTGGCATCAATCTTGCTACTGCCGATGTAGTAATTTTGTATGATTCAGATTGGAATCCCCAAGTAGATCTCCAGGCTATGGACCGTGCACATAGAATTGGACAAACCAAGACTGTCCGAGTGTTCCGCTTTATAACTGATAACACCGTAGAAGAAAGAATAGTGGAACGTGCTGAGATGAAACTCAGGCTGGATTCAATTGTCATTCAACAAGGGAGGCTGGTGGACCAGAATCTGAACAAAATTGGGAAGGACGAAATGCTGCAGATGATTCGACATGGGGCAACGCACGTATTTGCCTCAAAGGAGAGTGAGATCACCGATGAGGATATAGATGGCATTTTGGAAAGAGGTGCAAAGAAGACTGCTGAGATGAATGAAAAGCTCTCCAAAATGGGTGAAAGCTCGCTTAGAAATTTTACAATGGATACAGAGTCAAGTGTGTATAACTTTGAAGGGGAAGACTATAGAGAAAAACAAAAGATTGCATTCACTGAGTGGATTGAACCACCCAAACGAGAGAGAAAAGCTAACTACGCTGTTGATGCATATTTCAGAGAAGCACTTCGTGTTAGTGAACCTAAAGCACCCAAGGCTCCTCGACCTCCAAAACAACCCAATGTTCAGGATTTTCAGTTTTTTCCCCCACGTTTATTTGAATTACTGGAAAAAGAAATTCTGTATTACAGAAAAACTATTGGGTACAAGGTACCTCGGAGCCCCGACCTCCCCAACGCAGCACAGGCGCAGAAAGAAGAGCAGCTCAAAATCGATGACGCGGAGCCCCTTAATGACGAGGAGCTGGAGGAGAAGGAGAAGCTTCTGACGCAGGGCTTTACCAATTGGAATAAGAGAGACTTTAACCAGTTTATTAAAGCTAATGAGAAGTGGGGTCGTGATGATATTGAAAATATAGCAAGAGAAGTGGAAGGAAAAACTCCAGAAGAGGTCATTGAATATTCAGCTGTGTTCTGGGAAAGATGCAATGAGCTCCAGGACATAGAGAAGATCATGGCACAGATTGAAAGGGGAGAGGCAAGAATTCAGAGAAGAATAAGCATCAAAAAAGCACTTGATACGAAGATTGGACGGTACAAAGCACCTTTTCATCAGCTCCGAATATCATACGGTACCAACAAAGGAAAAAACTACACAGAGGAGGAGGATCGTTTTCTGATTTGTATGCTTCACAAGCTTGGATTTGACAAGGAAAATGTCTATGATGAATTGCGGCAGTGCATACGCAACTCTCCTCAGTTCAGATTTGATTGGTTTCTTAAGTCCAGAACTGCAATGGAGCTCCAGCGGCGGTGTAATACCTTAATTACATTGATTGAAAGAGAAAACATGGAGCTGGAAGAGAAGGAGAAGGCAGAGAAAAAGAAACGAGGGCCAAAGCCTTCAACACAGAAGCGTAAAATGGATGGAGCACCTGATGGTAGAGGAAGAAAAAAGAAGCTGAAACTATGA

Related Sequences

XP_004868615.1 Protein

Smarca5 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like isoform X1 [Heterocephalus glaber]

Length: 1051 aa      
>XP_004868615.1
MASAAEPPPPPPPESAASKPAASAGGGSSGCNKGGPDGVAALAVPAAAGADPTDAEAEEVFDDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNICTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVFASKESEITDEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRSPDLPNAAQAQKEEQLKIDDAEPLNDEELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYDELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPKPSTQKRKMDGAPDGRGRKKKLKL