Sequence details NCBI ID: XM_004868547.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pdgfc
Gene Name platelet derived growth factor C, transcript variant X2
Entrez Gene ID 101710927

Database interlinks

Part of NW_004624848.1 (Scaffold)

For more information consult the page for NW_004624848.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PDGFC ENSCPOG00000012495 (Guinea pig)

Gene Details

platelet derived growth factor C

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011243, Guinea pig)

Protein Percentage 73.61%
CDS Percentage 72.61%
Ka/Ks Ratio 0.14524 (Ka = 0.1857, Ks = 1.2787)

PDGFC ENSG00000145431 (Human)

Gene Details

platelet derived growth factor C

External Links

Gene Match (Ensembl Protein ID: ENSP00000422464, Human)

Protein Percentage 85.39%
CDS Percentage 82.25%
Ka/Ks Ratio 0.11697 (Ka = 0.0809, Ks = 0.6919)

Pdgfc ENSMUSG00000028019 (Mouse)

Gene Details

platelet-derived growth factor, C polypeptide

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000029652, Mouse)

Protein Percentage 81.82%
CDS Percentage 79.44%
Ka/Ks Ratio 0.11842 (Ka = 0.1035, Ks = 0.8741)

Pdgfc ENSRNOG00000010695 (Rat)

Gene Details

platelet derived growth factor C (Pdgfc), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000015081, Rat)

Protein Percentage 80.19%
CDS Percentage 78.79%
Ka/Ks Ratio 0.13021 (Ka = 0.1134, Ks = 0.8705)

Genome Location

Sequence Coding sequence

Length: 930 bp    Location: 1484946..1704329   Strand: +
Raw sequence   
>XM_004868547.1
ATGCTCCTCCTCGGCCTCCTCCTGCTCGCATCCGCGCTGGCCGGCCGCAGACCCGCGACCCGCGCGGAGCCCAGCCCGGGCGCCAAGCTGCAGCTCGGCGGCGGCGCCAAGGAGCACAACGGAGTGCAAGACCCCCAGCACGAGAGGATCATTACGGTGTCTGCTAATGGCACTGTTCACAGCCCCAGATTCCCTCACGCTTACCCGAGGAATATGGTCTTGGTGTGGAGACTCGTAGCAGTAGAGGAAAATATGTGGATACAGCTTACATTTGATGAGCGGTTTGGGCTGGAGGACCCGGAAGACAACATCTGCAAGTATGATTTTGTAGAAGTCGAGGAGCCCAGTGATGGAAGCGTGTTAGGGCGCTGGTGTGGCTCTGCTGCTGCCCCAGGAAAGCAGATCTCAAAAGGAAACCAGATAAGGATCAGATTTGTATCTGACGAATACTTCCCTTCAGAGCCAGGGTTCTGCATCCACTACAACATCGTCCTGCCACAAGTTGCAGAGGTGGGGAGTCCTTCGGTGTTGCCCCCTTCGGCTTTGCCCCTGGAGCTGCTCAATAATGCCATCTCGGCCTTCAGTACCTTGGAAGAACTCATTCGCTATCTCGAGCCGGACAGGTGGCAGCTGGACCTGGAAGATCTGTACAGGCCCTCTTGGCAGCTCCTGGGCAAGGCTTTCGTGTTTGGAAGAAAATCCAAAGTGGTAGACCTGAACCTTATAAAAGAGGAGGTGAGATTGTACAGCTGCACCCCTCGGAACTTCTCGGTGTCCATACGGGAGGAACTGAAGAGAACCGATACCATTTTCTGGCCAGGTTGCCTCCTGGTTAAACGCTGCGGTGGGAACTGTGCCTGCTGTCTCCACAGCTGCAATGAGTGTCAGTGTGTTCCAAGCAAAGTCACGAAAAAATACCATGAGGAATGA

Related Sequences

XP_004868604.1 Protein

Pdgfc PREDICTED: platelet-derived growth factor C isoform X2 [Heterocephalus glaber]

Length: 309 aa      View alignments
>XP_004868604.1
MLLLGLLLLASALAGRRPATRAEPSPGAKLQLGGGAKEHNGVQDPQHERIITVSANGTVHSPRFPHAYPRNMVLVWRLVAVEENMWIQLTFDERFGLEDPEDNICKYDFVEVEEPSDGSVLGRWCGSAAAPGKQISKGNQIRIRFVSDEYFPSEPGFCIHYNIVLPQVAEVGSPSVLPPSALPLELLNNAISAFSTLEELIRYLEPDRWQLDLEDLYRPSWQLLGKAFVFGRKSKVVDLNLIKEEVRLYSCTPRNFSVSIREELKRTDTIFWPGCLLVKRCGGNCACCLHSCNECQCVPSKVTKKYHEE