Sequence details NCBI ID: XM_004868525.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Lrrfip1
Gene Name leucine rich repeat (in FLII) interacting protein 1
Entrez Gene ID 101700543

Database interlinks

Part of NW_004624847.1 (Scaffold)

For more information consult the page for NW_004624847.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LRRFIP1 ENSCPOG00000006777 (Guinea pig)

Gene Details

leucine rich repeat (in FLII) interacting protein 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006108, Guinea pig)

Protein Percentage 82.78%
CDS Percentage 83.22%
Ka/Ks Ratio 0.2025 (Ka = 0.1144, Ks = 0.5651)

LRRFIP1 ENSG00000124831 (Human)

Gene Details

leucine rich repeat (in FLII) interacting protein 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000375857, Human)

Protein Percentage 19.65%
CDS Percentage 34.87%
Ka/Ks Ratio 0.22763 (Ka = 1.621, Ks = 7.121)

Lrrfip1 ENSMUSG00000026305 (Mouse)

Gene Details

leucine rich repeat (in FLII) interacting protein 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000095254, Mouse)

Protein Percentage 19.37%
CDS Percentage 36.31%
Ka/Ks Ratio 0.13005 (Ka = 1.5364, Ks = 11.8143)

Lrrfip1 ENSRNOG00000019892 (Rat)

Gene Details

leucine rich repeat (in FLII) interacting protein 1 (Lrrfip1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000045021, Rat)

Protein Percentage 21.54%
CDS Percentage 37.76%
Ka/Ks Ratio 0.15589 (Ka = 1.4072, Ks = 9.0269)

Genome Location

Sequence Coding sequence

Length: 2577 bp    Location: 3027657..3095607   Strand: +
Raw sequence   
>XM_004868525.1
ATGGCCAGCCCGGCGGGCGCGCGGAGCACGGAAGTGGACTGCCTGAGCCCGGAAGCCCAGCGGCTGGCAGAGGCCCGGCTTGCAGCGAAGCGGGCAGCCCGCGCCGAGGCCCGAGAGATCCGCATGAAGGAGCTGGAGCGGCAGCAGAAGGAGATCTATCAGGTTCAAAAGAAATATTATGGGCTGGATACTAAATGGGGTGACATCGAGCAATGGATGGAGGACAGCGAGCGCTATTCACACAGATCCCGGAGGCTCACATCGGCCTCAGACGAAGATGAGCGCCTGTCAGTGGGTAGCAGAGGCAGTCTTCGGACTAATGGTTATGATGGAGACTTGTACGGATCCCAGCCCCCGAACAGAAGATCTGGCAGGATCCCCTCTGCCACAGTAGTCTGTCGCCTGCCCCTTCCCCCTCTCCCTGTCCGAACCCCCCGCCGAGGGGGCTCCCGTGCACTTGTCACAGCCCGCGGCGACTGCAGCCACGGCGGCCTTTCCAGTCTCCTGCCGGGCACAGCAGACCCTGGTGACGGTGACGCGGCAGCTAGCGCTGCGGGCTGTGGACCCTCCACCCGGGCCTCGGGCTCCCCGGTGGTGGCCCTGCTCCCAAGCCACAGCCTGCCCAGAATGGAAGCTGAGGCTGTGGCTCCCTTCCCGCCCCCACGCTGTGTGGCTTGTCCACTGGTGACATCGAGTGGGCACTTCAGCCTCTTCAATGTGACGTCCACAGAGCCCAGCGGCTGTTTGGATTGCAACCAGTTTGCTGAGAACCCATGCACCTTCCCGCCCGCTCCGTGGGCCCTGGGCAGTGGCCTGAAAGTGAGGCACGGCCGCTGTGAAGGGAGCCGCATGCCCGCCAGCCAGCAGCCCCTCCACATGTCAGAAAGCCAGTGTCCTGGCCGGGTTCCCCTCACAGGTTGGGCTGCAGCAGCGCAGCCCTGGCCTCCAGAGCCCGCCTCCAGTGGAGGTGAAGCCACACGCCAACCAACCTGTGCTCGAGTCTGGGTCTCCGGGGAGAGTGGGGGAGGTGCCAGGGGCCACCCTGCACGGTGTCCTCCGGATGTGTCACCTCCCAGTCACCTTGCATGCTTCTGGGCCCCAGCGGGAAGAAGGTGGTGCAGTGACCCTCTGTTTCAGTCCCAGGCATCTGTGTTCCAAGACAGCAGCGTTGGCCGGGCTCAGCGGGGCAGCACCTGCGGTTCCCTGGCTCCCTCGGAGTACAGCGGCCTCCTCAGCTCCGGCTCCTGCGCCTCCTCCAGGGCCAGCTCGGCACGAGCCAGCCCGGTGGTTGAAGAAAGACCTGAGAAAGATTTTACTGAGAAGGGCTCCCGCAGCATGCCCGGTCTGTCCGCAGCCACGCTGGCCTCCCTGGGCGGCTCCTCCTCCCGGAGGGGGAGCGGTGACACCTCCATCTCCATCGACACCGAGGCGTCCCTGAGGGAGATCAAGGAACTCAATGAGTTAAAGGACCAGATTCAGGACGTAGAAGGCAAATACATGCAGGGATTGAAAGAGATGAAGGACTCACTCACAGAAGTAGAGGAGAAGTACAAGAAGGCGATGGTTTCCAACGCGCAGCTAGACAACGAGAAGACCAACTTCCTGTACCAGGTGGACACCCTCAAAGACATGCTGCTGGAGCTGGAGGAGGAGCTGGCCGAGGCCCGGCGGCAGTATGAAGAGAAGACCAAGGACTTCGAGCGGGAGAAGCACGCGCACAGGGCGCTGCAGTTCCAGTTCGCCGAGGTGAAGGAGGCTCTGCGGCAGAGAGACGAGATGCTGGAGGAAATCCGACAGCTACAGCAGAAACAGGCGAGTTATATCGGGGAGATTTCTGATCTTCAGGAAACAATAGAGTGGAAAGACAAGAAGATAGGGGCTTTAGAGAGGCAGAAAGAGTTCTTTGACTCCATAAGGAGCGAGCGCGATGACCTTAGAGAAGAAATAGTGAAGCTGAAAGAGGAATTCAAGAAACACGGGATAACCCTAAACTCAGAAGTAGCCACCAACGGAGAAACTTCAGGCACACTAAATAATGTGGGGCACCCAGGCCCTACCAAGTTGACAAAAGAAGAGGTGAATGCCCTCCAGCCATCCGGGGATGGGACACTAGATATTAGGTTGAAAAAGCTCATCGACGAACGGGAATGCTTATTAGAACAGATTAAGAAACTCAAAGGGCAGCTGGAGGGAAAACCGAAGAACAGCAAGCTGGACCACTCAAGGGCCGCAGAGGATGTGCTGGAAAACGGGACGGGCGTGCACGTGCTGGACCTGCAGAGAGATGCCAACAGGCAGATCAGCGACCTCAAATTTAAACTGGCCAAGTCTGAACAAGAGATAACCGCACTAGAACAAAATGTAATAAGGTTAGAGAGCCAAGTGTCGCGTTATAAATCAGCCGCCGAAAATGCAGAAAAAATAGAAGATGAACTTAAGGCAGAAAAACGGAAACTCCAAAGAGAGCTTCGCTCAGCACTGGATAAAACAGAAGAGCTCGAGGTGAGCAACGGCCACTTGGTGAAGCGTCTGGAGAAGATGAAGGCCAACCGGAGCGCGCTCTTGACCCAGCAGTAG

Related Sequences

XP_004868582.1 Protein

Lrrfip1 PREDICTED: leucine-rich repeat flightless-interacting protein 2 [Heterocephalus glaber]

Length: 858 aa      View alignments
>XP_004868582.1
MASPAGARSTEVDCLSPEAQRLAEARLAAKRAARAEAREIRMKELERQQKEIYQVQKKYYGLDTKWGDIEQWMEDSERYSHRSRRLTSASDEDERLSVGSRGSLRTNGYDGDLYGSQPPNRRSGRIPSATVVCRLPLPPLPVRTPRRGGSRALVTARGDCSHGGLSSLLPGTADPGDGDAAASAAGCGPSTRASGSPVVALLPSHSLPRMEAEAVAPFPPPRCVACPLVTSSGHFSLFNVTSTEPSGCLDCNQFAENPCTFPPAPWALGSGLKVRHGRCEGSRMPASQQPLHMSESQCPGRVPLTGWAAAAQPWPPEPASSGGEATRQPTCARVWVSGESGGGARGHPARCPPDVSPPSHLACFWAPAGRRWCSDPLFQSQASVFQDSSVGRAQRGSTCGSLAPSEYSGLLSSGSCASSRASSARASPVVEERPEKDFTEKGSRSMPGLSAATLASLGGSSSRRGSGDTSISIDTEASLREIKELNELKDQIQDVEGKYMQGLKEMKDSLTEVEEKYKKAMVSNAQLDNEKTNFLYQVDTLKDMLLELEEELAEARRQYEEKTKDFEREKHAHRALQFQFAEVKEALRQRDEMLEEIRQLQQKQASYIGEISDLQETIEWKDKKIGALERQKEFFDSIRSERDDLREEIVKLKEEFKKHGITLNSEVATNGETSGTLNNVGHPGPTKLTKEEVNALQPSGDGTLDIRLKKLIDERECLLEQIKKLKGQLEGKPKNSKLDHSRAAEDVLENGTGVHVLDLQRDANRQISDLKFKLAKSEQEITALEQNVIRLESQVSRYKSAAENAEKIEDELKAEKRKLQRELRSALDKTEELEVSNGHLVKRLEKMKANRSALLTQQ