Sequence details NCBI ID: XM_004868514.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pdcd1
Gene Name programmed cell death 1, transcript variant X2
Entrez Gene ID 101725530

Database interlinks

Part of NW_004624847.1 (Scaffold)

For more information consult the page for NW_004624847.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PDCD1 ENSCPOG00000004879 (Guinea pig)

Gene Details

programmed cell death 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004391, Guinea pig)

Protein Percentage 82.33%
CDS Percentage 84.92%
Ka/Ks Ratio 0.24981 (Ka = 0.1059, Ks = 0.4238)

PDCD1 ENSG00000188389 (Human)

Gene Details

programmed cell death 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000335062, Human)

Protein Percentage 61.92%
CDS Percentage 71.77%
Ka/Ks Ratio 0.25494 (Ka = 0.2624, Ks = 1.0294)

Pdcd1 ENSMUSG00000026285 (Mouse)

Gene Details

programmed cell death 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000027507, Mouse)

Protein Percentage 60.92%
CDS Percentage 69.13%
Ka/Ks Ratio 0.35939 (Ka = 0.3181, Ks = 0.885)

Genome Location

Sequence Coding sequence

Length: 996 bp    Location: 5738554..5732922   Strand: -
Raw sequence   
>XM_004868514.1
ATGCATAGCCTGCCTGGGGGCAGCAATCTGGGGTCAACGGGGAAGGGGGCTAAGATCCTCAGGACAACATTGGCCCCAGGTCAGGGCTGGAACCATCAACAAAGTCAAAGAAAGGGGCTTCCGTGGGGTGACCGCCCCATCCTGGCAGCGTGCAGGAGAGGCCCAGGGCCTGCCTGGCTGCCAGCGCCTTCTCACAGCACTCTTCTGCCGTTCCTCTCAGACCCGCCCAACAGGTCCTGCAGCCCTTCCTTCTCCCCAGCGCAGCTCTCAGTGCCCGAGGGTGCCAATGCCACCTTCACCTGCAGTTTCTCCAACTCATCAGAGCACTTCGTGCTAAACTGGTACCGGCTAAGCCCCAGTAACCAGACCGACAAGCTGGCTGCCTTCCCCAGGGAGAGCAACCTGGACCCACGCTTCCAGGTGGCCCAGCTCCCCGATGGGCAAAGCTTCCAGATGAGTGTCCTCTCCGTGCAGCGCAATGACAGCGGCATCTACCTGTGTGGGGCCATCTCACTTCGGCCCAAGGCGGAGATCAGAGAGAGCTGCCGGGCAGAGCTCATGGTGACAGAGAGAATCCTGGAGCCCCCCACAGTGCACCCCAGCCCCTCGCCCAGGCCGGTGGGCCACCTTCAAGGCCTGGTTGTTGGGGCCATGAGTGTTCTAGTGGGCATCCCTGTGCTGCTGCTGCTGGCCTGGGTCCTGGCTGCCGTATGCTCCAGGGCTGTGCCAGAGGCCGAAGGAGCTAGGAGCAAGGAGCAACCCCGGGAAGGCCCCTCAGCAGTGCCCACCGTCACCATGGACTATGGGGTTCTGGACTTCCAGGGCCGAGAGAAGGCCCCAGAATGCCCTGCCCCCTGTGTGCACACAGAGTATGCCACCATCGTCTTCCCTGAAGGGCTAGGCGCCTTGTCTCCAGGCCTCAGGACCTCTGCGGGTGGCCTCCAGGCCCTCCGGCCTCCAAGACAGCAGGACGGACACTGCTCCTGGCCCCTCTGA

Related Sequences

XP_004868571.1 Protein

Pdcd1 PREDICTED: programmed cell death protein 1 isoform X2 [Heterocephalus glaber]

Length: 331 aa      
>XP_004868571.1
MHSLPGGSNLGSTGKGAKILRTTLAPGQGWNHQQSQRKGLPWGDRPILAACRRGPGPAWLPAPSHSTLLPFLSDPPNRSCSPSFSPAQLSVPEGANATFTCSFSNSSEHFVLNWYRLSPSNQTDKLAAFPRESNLDPRFQVAQLPDGQSFQMSVLSVQRNDSGIYLCGAISLRPKAEIRESCRAELMVTERILEPPTVHPSPSPRPVGHLQGLVVGAMSVLVGIPVLLLLAWVLAAVCSRAVPEAEGARSKEQPREGPSAVPTVTMDYGVLDFQGREKAPECPAPCVHTEYATIVFPEGLGALSPGLRTSAGGLQALRPPRQQDGHCSWPL