Details from NCBI annotation

Gene Symbol Gpc1
Gene Name glypican 1, transcript variant X1
Entrez Gene ID 101701121

Database interlinks

Part of NW_004624847.1 (Scaffold)

For more information consult the page for NW_004624847.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

GPC1 ENSCPOG00000000572 (Guinea pig)

Gene Details

glypican 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000503, Guinea pig)

Protein Percentage 90.47%
CDS Percentage 89.03%
Ka/Ks Ratio 0.0682 (Ka = 0.0437, Ks = 0.6403)

GPC1 ENSG00000063660 (Human)

Gene Details

glypican 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000264039, Human)

Protein Percentage 86.92%
CDS Percentage 86.74%
Ka/Ks Ratio 0.05098 (Ka = 0.0606, Ks = 1.1894)

Gpc1 ENSMUSG00000034220 (Mouse)

Gene Details

glypican 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000047199, Mouse)

Protein Percentage 87.25%
CDS Percentage 84.74%
Ka/Ks Ratio 0.04989 (Ka = 0.064, Ks = 1.283)

Gpc1 ENSRNOG00000049437 (Rat)

Gene Details

glypican 1 (Gpc1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000066597, Rat)

Protein Percentage 87.99%
CDS Percentage 85.36%
Ka/Ks Ratio 0.05291 (Ka = 0.0602, Ks = 1.1369)

Genome Location

Sequence Coding sequence

Length: 1677 bp    Location: 4832658..4853851   Strand: +
>XM_004868429.1
ATGGAGCTCTGGGCCCGCGGCTGGTGGCTGCTGTGCGCGGCCGCCACGCTCGCCGCCTGCGCCCGTGGGGACGCTGCCAGCAAGAGTCGTAGCTGCGGCGAGGTCCGCCAGATCTACGGCGCCAAGGGCTTCAGCCTGAGCGACGTGCCCCAGGCAGAGATCTCGGGTGAGCATCTGCGCATCTGCCCTCAGGGCTACACCTGCTGCACCAGCGAGATGGAGGAGAACCTGGCCAACCGCAGCCGTGCGGAGCTGGAGAGTGCGCTCCGCGACAGCAGCCGCGCCCTGCAGGCCATGCTGGCCACCCAGCTGCGGGGCGTGGACGACCACTTCCAGCAGCTGCTGAACAACTCGGAGCGAGTGCTGCAGGACGCCTTCCCTGGTGCCTTCGGGGAGCTGTACACGCAGAACGCCCAGGCCTTTGGGGACCTGTACACTGAGCTGCGCCTCTACTACCATGGCGCCAACCTGCACCTGGAGGAGACACTGGCCGAGTTCTGGGCGCAGTTGCTGGAGCGCCTCTTCCGGCAGCTGCACCCCCAGCCACTGCTGCCCGACGACTACCTGGACTGTCTGGCCAAGCAGGCTGAGGCGCTGCGGCCCTTTGGGGATGCCCCACGGGAGCTACGCCTGCGGGCCCCACGGGCCTTCGTGGCCGCTCGAGCCTTCGTGCAGGGCCTGGGTGTGGCCGGAGACGTGGTCCGGAAGGTGGCCCAGGTGCCCCTGAGTGCGGAGTGCTCGCGCGCTGTTATGAAGCTGGGGTACTGTGCCCACTGCCTGGGGGTTCCTGGTGCCCGGCCCTGCCCCGATTACTGCCAGAACGTGCTCAAGGGCTGCCTTGCCAACCAGGCCGATCTGGACGCTGAGTGGAGAAACCTCCTGGACTCCATGGTGCTCATCACTGACAAGTTCTGGGGCCCATCGGGTGCGGAGAACGTGATCAGCAGCACACACATGTGGTTGGCGGAGGCCATCAACGCCCTGCAGGACAACAGGGACTCGCTCACGGCTAAGGTCATCCAGGGCTGCAGGAACCCCAAAGTCAATCTGCAGGGCCCAGGCCCGGAGGAGAAGCCACACCGGGGGAAGCTGGTGCTGCAGGAGAAGCCCCCCACAGGTGCCCTGGAGATGCTGGTCTCAGAGGCCAAGACTCAGCTCCGAGATGTGCAGGACTTCTGGGTCAGCCTCCCCGGCACGCTGTGCAGCGAGAAGATGGCCATGAGTTCCACCAGCGACGACCGCTGCTGGAATGGGATGAGCAAGGGCCGGTACCTGCCCGAGGTGATGGGTGATGGCCTGGCCAACCAGATCAACAACCCCGAGGTGGAGGTGGACATCACCAAGCCCGACATGACCATCCGGCAGCAGATCATGCAGCTGAAGATCATGACCAACCGGCTACGCGGAGCCTACAGTGGCAACGACGTGGACTTCCAGGATGCAAGTGACGATGGCAGCGGCTCGGGCAGTGGCGGTGGTTGCCTGGACGACGCCTGCGGCCGGAGGTTCAGCAAGAAGAGCTCCAGCTCTCGGACCCCTTTGACCCATGCCCTCCCTGGCCTCTCGGAGCGCGAGGGACAGAAGACCTCAGCCGCCAGCTGCCCCGGTCCCCACCCCTTCCTCCTGCTCCTCCTCCTCACCCTGGTCCTCGCAGCACCCAGGCCCCGGTGGCGGTAA

Related Sequences

XP_004868486.1 Protein

Gpc1 PREDICTED: glypican-1 isoform X1 [Heterocephalus glaber]

Length: 558 aa      View alignments
>XP_004868486.1
MELWARGWWLLCAAATLAACARGDAASKSRSCGEVRQIYGAKGFSLSDVPQAEISGEHLRICPQGYTCCTSEMEENLANRSRAELESALRDSSRALQAMLATQLRGVDDHFQQLLNNSERVLQDAFPGAFGELYTQNAQAFGDLYTELRLYYHGANLHLEETLAEFWAQLLERLFRQLHPQPLLPDDYLDCLAKQAEALRPFGDAPRELRLRAPRAFVAARAFVQGLGVAGDVVRKVAQVPLSAECSRAVMKLGYCAHCLGVPGARPCPDYCQNVLKGCLANQADLDAEWRNLLDSMVLITDKFWGPSGAENVISSTHMWLAEAINALQDNRDSLTAKVIQGCRNPKVNLQGPGPEEKPHRGKLVLQEKPPTGALEMLVSEAKTQLRDVQDFWVSLPGTLCSEKMAMSSTSDDRCWNGMSKGRYLPEVMGDGLANQINNPEVEVDITKPDMTIRQQIMQLKIMTNRLRGAYSGNDVDFQDASDDGSGSGSGGGCLDDACGRRFSKKSSSSRTPLTHALPGLSEREGQKTSAASCPGPHPFLLLLLLTLVLAAPRPRWR