Sequence details NCBI ID: XM_004868416.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Hdac4
Gene Name histone deacetylase 4, transcript variant X1
Entrez Gene ID 101696612

Database interlinks

Part of NW_004624847.1 (Scaffold)

For more information consult the page for NW_004624847.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

HDAC4 ENSCPOG00000013072 (Guinea pig)

Gene Details

histone deacetylase 4

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011770, Guinea pig)

Protein Percentage 96.86%
CDS Percentage 92.09%
Ka/Ks Ratio 0.03505 (Ka = 0.0146, Ks = 0.4164)

HDAC4 ENSG00000068024 (Human)

Gene Details

histone deacetylase 4

External Links

Gene Match (Ensembl Protein ID: ENSP00000264606, Human)

Protein Percentage 93.54%
CDS Percentage 88.96%
Ka/Ks Ratio 0.043 (Ka = 0.0296, Ks = 0.6893)

Hdac4 ENSMUSG00000026313 (Mouse)

Gene Details

histone deacetylase 4

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000008995, Mouse)

Protein Percentage 93.31%
CDS Percentage 87.45%
Ka/Ks Ratio 0.04535 (Ka = 0.032, Ks = 0.7054)

Hdac4 ENSRNOG00000020372 (Rat)

Gene Details

histone deacetylase 4 (Hdac4), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000027622, Rat)

Protein Percentage 93.22%
CDS Percentage 87.68%
Ka/Ks Ratio 0.04849 (Ka = 0.033, Ks = 0.6807)

Genome Location

Sequence Coding sequence

Length: 3255 bp    Location: 4101487..3849061   Strand: -
Raw sequence   
>XM_004868416.1
ATGAGCTCTCAAAGCCATCCAGATGGTCTTTCTGGCCGAGACCAGCCAGTGGAGCTGCTGAACCCTGCCCGCGTGAACCACATGCCCAGCACGGTGGACGTGGCCACAGCACTGCCCTTGCAGGTGGCCCCCACAGCAATGCCCATGGACCTGCGCCTGGACCACCAGTTCTCGCTGCCTGTGGCAGAGCCAGCACTACGGGAGCAGCAGCTGCAACAGGAGCTCCTGGCACTGAAGCAGAAGCAGCAGATCCAGCGGCAGATCCTCATTGCCGAGTTCCAGCGGCAGCATGAGCAGCTGTCCCGGCAGCACGAGGCCCAGCTGCATGAGCACATAAAGCAGCAGCAGGAGATGCTGGCTCTCAAGCACCAGCAGGAGCTGCTGGAGCACCAGCGCAAGCTGGAGAGGCACCGCCAGGAGCAGGAGCTGGAGAAGCAGCACCGCGAGCAGAAGCTGCAGCAGCTCAAGAACAAGGAGAAGGGCAAGGAGAGTGCCGTGGCCAGCACAGAGGTGAAGATGAAGCTACAGGAGTTTGTCCTCAACAAAAAGAAGGCCCTGGCCCATCGGAACCTGAACCAGTGCATTTCCAGTGACCCCCGCTTCTGGTACGGGAAGACGCAACATAGCTCCCTGGACCAGAGCTCTCCGCCACAGAGCGGGGTGTCAGCCTCCTACAACCACCCAGTCCTGGGGATGTACGATGCCAAAGATGACTTCCCTCTGAGGAAAACAGCTTCTGAACCCAACCTGAAATTGCGGTCCAGACTTAAGCAGAAAGTGGCAGAGAGACGGAGCAGCCCCCTATTGCGCAGGAAGGATGGGCCCGTGGTTACTGCCCTAAAAAAGCGTCCCCTGGATGTCACAGACTCCGCGTGCAGCAGTGCCCCAGGTTCCGGGCCCAGCTCACCCAACAGCAGCTCTGGCAACGTCAGCACTGAGAACGGCATCTCGACCACCATGTCCAACGTCCCGGCTGAGACCAGTTTGGCACACAGACTTGTGACTCGAGAAGCCTCTGTCGCCCCGCTCCCTCTCTACACATCGCCGTCCCTGCCGAACATCACCCTGGGACTTCCTGCCACTGGCCCTTCTGCAGGCACAGCAGCCCAGCAGGACGCCGAGAGGCTCTCTCTCCCGGCCCTGCAGCAGCGGATCTCCCTCTTCCCCGGCACCCACCTGGGCCCCTATCTGGGCGCCTCGCCCCTGGAGCGGGACGGCGGGGCAGCGCACAGCCCCCTTCTGCAGCACATGGTCCTACTGGAGCAGCCGCCCGCACAGGCCCCCCTCGTCACAGGCCTGGGTGCGCTGCCCCTGCACGCACAGCCCCTGGTCGGCGCAGACCGTGTGTCCCCGTCCATGCACAAGCTGCGGCAGCACCGCCCACTGGGGCGCACGCAGTCGGCGCCGCTGCCGCAGAGCGCACAGGCCCTTCAGCACCTGGTGATCCAGCAGCAGCACCAGCAGTTCCTGGAGAAGCACAAGCAGCACTTCCAGCAGCAGCAGCTGCACATGGGCAAGATCATCCCCAAACCCAGTGAGCCGGCCCGGCAGCCCGAGAGCCACCCCGAGGAGACGGAGGAGGAGCTCCGCGAGCACCAGGCCCTGCTGGATGAGCCCTACCTGGACCGGCTTCCGGGGCAGAAGGAGGCACATGCGCTGGGCGGCGTGCAGGTGAAGCAGGAGCCCATCGAGAGTGACGAGGAGGAGGTGGAGCCCTCATGCGAGGCAGAGCCTGGCCAGCGTCCACCCACTGATCAGGAGCTGCTCTTCAGACAGCAAGCACTCCTGCTGGAGCAGCAGCGGATCCACCAGCTGAGGACCTACCAGGCATCCATGGAGGCCGCAGGCATCCCTGTGTCCTTCGGCAGCCACCGGCCTCTGTCCCGGGCACAGTCCTCCCCGGCGTCTGCCACCTTCCCTGTGACTGTCCAGGAGCCCCCCAGCAAGCCGCGGTTCACCACAGGCCTCGTGTATGACACGCTGATGCTGAAGCACCAGTGCGCCTGTGGGAACACCAACAGCCACCCCGAGCACGCTGGGAGGATCCAGAGCATCTGGTCCCGCCTGCAGGAGACCGGCCTGCGCAGCAAGTGTGAGTGCGTCCGAGGACGGAAGGCCACGCTGGAGGAGCTGCAGACGGTGCACTCGGAGGCCCACACGCTGCTGTATGGCACAAACCCCCTCAACAGGCAGAAGCTGGACAGTAAGAAACTTCTAGGCTCCCTGACCTCCGTGTTTGTGAGACTCCCTTGCGGTGGTGTTGGGGTGGACAGCGACACCATCTGGAACGAGGTGCACTCGTCAGGCGCGGCTCGTCTGGCCGTGGGTTGCGTGGTGGAGCTGGTCTTCAAGGTGGCCACGGGGGAGCTGAAGAATGGCTTTGCTGTGGTCCGGCCCCCAGGACACCACGCGGAGGAGAGCACGCCCATGGGCTTTTGCTACTTCAACTCGGTGGCGGTTGCTGCCAGGCTCCTCCAGCAGCGGCTGAGCGTGAGCAGGATCCTCATTGTGGACTGGGACGTGCACCATGGGAACGGGACCCAGCAGGCTTTCTACAGTGACCCCAGTGTTCTGTACGTGTCCCTGCACCGCTATGATGATGGGAACTTCTTTCCAGGCAGCGGTGCACCTGACGAGGTGGGCACAGGGCCAGGCGTGGGCTTCAATGTCAACATGGCCTTCACGGGAGGCCTGGACCCCCCCATGGGAGACACGGAGTACTTGGCGGCCTTCAGAACCGTGGTCATGCCAATTGCCAATGAGTTTGCCCCAGACATGGTGCTGGTGTCATCGGGCTTCGATGCCGTGGAGGGCCACCCCACACCTCTCGGAGGGTACAACCTCTCTGCCAGATGTTTCGGGTACCTGACGAAGCAGCTGATGGGCCTGGCCGGCGGCCGGATCGTGCTGGCCCTCGAGGGAGGCCATGACCTGACAGCCATCTGCGATGCCTCGGAAGCCTGTGTTTCTGCTCTGCTGGGAAACGAGCTTGAGCCTCTGCCAGAAAAGGTCTTACAGCAGAGACCCAACGCCAACGCTGTCCGCTCCATGGAGAAGGTTGTGGAGATCCACGGTAAGTACTGGCGCTGCCTGCACCGCTTGTCCTCCACCGTGGGACACTCGCTGATCCAGGCGCAGAAATGTGAGAACGAAGAAGCCGAGACGGTCACCGCCATGGCCTCGCTGTCCGTGGGCGTGAAGCCCACTGAGAAGAGGCCGGAAGAGGAGCCCATGGAGGAGGAGCCGCCCCTGTAG

Related Sequences

XP_004868473.1 Protein

Hdac4 PREDICTED: histone deacetylase 4 isoform X1 [Heterocephalus glaber]

Length: 1084 aa      View alignments
>XP_004868473.1
MSSQSHPDGLSGRDQPVELLNPARVNHMPSTVDVATALPLQVAPTAMPMDLRLDHQFSLPVAEPALREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLALKHQQELLEHQRKLERHRQEQELEKQHREQKLQQLKNKEKGKESAVASTEVKMKLQEFVLNKKKALAHRNLNQCISSDPRFWYGKTQHSSLDQSSPPQSGVSASYNHPVLGMYDAKDDFPLRKTASEPNLKLRSRLKQKVAERRSSPLLRRKDGPVVTALKKRPLDVTDSACSSAPGSGPSSPNSSSGNVSTENGISTTMSNVPAETSLAHRLVTREASVAPLPLYTSPSLPNITLGLPATGPSAGTAAQQDAERLSLPALQQRISLFPGTHLGPYLGASPLERDGGAAHSPLLQHMVLLEQPPAQAPLVTGLGALPLHAQPLVGADRVSPSMHKLRQHRPLGRTQSAPLPQSAQALQHLVIQQQHQQFLEKHKQHFQQQQLHMGKIIPKPSEPARQPESHPEETEEELREHQALLDEPYLDRLPGQKEAHALGGVQVKQEPIESDEEEVEPSCEAEPGQRPPTDQELLFRQQALLLEQQRIHQLRTYQASMEAAGIPVSFGSHRPLSRAQSSPASATFPVTVQEPPSKPRFTTGLVYDTLMLKHQCACGNTNSHPEHAGRIQSIWSRLQETGLRSKCECVRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLTSVFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAARLLQQRLSVSRILIVDWDVHHGNGTQQAFYSDPSVLYVSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDTEYLAAFRTVVMPIANEFAPDMVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELEPLPEKVLQQRPNANAVRSMEKVVEIHGKYWRCLHRLSSTVGHSLIQAQKCENEEAETVTAMASLSVGVKPTEKRPEEEPMEEEPPL