Sequence details NCBI ID: XM_004868378.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Agap1
Gene Name ArfGAP with GTPase domain, ankyrin repeat and PH domain 1, transcript variant X4
Entrez Gene ID 101714494

Database interlinks

Part of NW_004624847.1 (Scaffold)

For more information consult the page for NW_004624847.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

AGAP1 ENSCPOG00000021863 (Guinea pig)

Gene Details

ArfGAP with GTPase domain, ankyrin repeat and PH domain 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000019658, Guinea pig)

Protein Percentage 97.55%
CDS Percentage 93.85%
Ka/Ks Ratio 0.02898 (Ka = 0.0103, Ks = 0.3554)

AGAP1 ENSG00000157985 (Human)

Gene Details

ArfGAP with GTPase domain, ankyrin repeat and PH domain 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000307634, Human)

Protein Percentage 97.08%
CDS Percentage 91.17%
Ka/Ks Ratio 0.02145 (Ka = 0.0122, Ks = 0.5706)

Agap1 ENSMUSG00000055013 (Mouse)

Gene Details

ArfGAP with GTPase domain, ankyrin repeat and PH domain 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000027521, Mouse)

Protein Percentage 96.62%
CDS Percentage 89.89%
Ka/Ks Ratio 0.02246 (Ka = 0.0153, Ks = 0.6819)

Agap1 ENSRNOG00000019476 (Rat)

Gene Details

ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 (Agap1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000060109, Rat)

Protein Percentage 95.07%
CDS Percentage 88.04%
Ka/Ks Ratio 0.02448 (Ka = 0.0215, Ks = 0.8799)

Genome Location

Sequence Coding sequence

Length: 2574 bp    Location: 1370703..1853079   Strand: +
Raw sequence   
>XM_004868378.1
ATGAACTACCAGCAGCAGCTGGCCAACTCGGCTGCCATCCGGGCCGAGATCCAGCGCTTCGAGTCGGTCCACCCCAACATCTACTCCATCTACGAGCTGCTGGAGCGCGTGGAGGAGCCGGTGCTGCAGAACCAGATCCGGGAGCACGTCATCGCCATCGAAGATGCTTTCGTGAACAGCCAGGAATGGACGTTGAGTCGATCGGTGCCAGAGCTCAAAGTGGGGATTGTGGGTAACTTGGCCAGTGGCAAGTCGGCCCTGGTGCATCGATACCTGACGGGCACGTATGTCCAGGAGGAGTCTCCGGAAGGTGGCAGGTTCAAGAAGGAAATCGTGGTGGACGGACAGAGCTATCTGCTGCTGATTAGAGATGAAGGGGGCCCCCCGGAGGCGCAGTTTGCCATGTGGGTGGACGCTGTCATATTTGTCTTCAGCTTGGAGGACGAGATCAGCTTCCAGACCGTCTACCACTACTACAGTCGAATGGCCAACTACCGGAACACGAGCGAGATCCCTCTCGTGCTGGTGGGGACCCAGGATGCCATAAGTTCCACGAACCCGCGGGTCATTGATGATGCCAGGGCCCGGAAGCTGTCCAACGACCTGAAGCGGTGCACGTACTACGAGACGTGTGCCACGTACGGGCTCAACGTGGAGCGGGTCTTTCAGGACGTGGCCCAGAAGATCGTAGCCACGAGGAAGAAGCAGCAGCTGTCCATAGGCCCCTGCAAGTCCCTGCCGAACTCTCCCAGCCACTCCTCAGTCTGCTCTGCACAGGTGTCGGCGGTGCACATGAGCCAGACGAGCAATGGAGGCGGGAGTTTAAGCGACTACTCCTCCTCTGTCCCATCCACTCCGAGCACCAGCCAGAAGGAACTCCGCATCGATGTCCCCGCCACTGCCAACACCCCGACGCCCGTGCGGAAACAGTCCAAGCGCCGGTCCAACCTTTTCACGTCTCGGAAAGGGAGTGACCCAGACAAAGAGAAGAAAGGCCTGGAGAGCCGTGCGGACAGCATCGGGAGCGGCCGAGCCATCCCAATTAAACAGGGCATGCTGTTGAAGCGAAGTGGAAAGTCGTTGAACAAAGAGTGGAAGAAGAAATACGTCACCTTGTGTGACAATGGCGTGCTGACCTATCATCCAAGTTTGCATGATTACATGCAGAATGTTCACGGTAAAGAGATTGACCTCCTGAGAACCACTGTGAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCGGCCTGCGCGCCCATCTCCAGTCCCAAAACCAATGGCTTGTCCAAGGACGTGAGCAGTTTACACATCTCACCAAATTCAGGGAATGTCACTAGTGCGCCGGGGTCTCAGATGGCAAGCGGCATCGGCCTGGTCTCCTTCAGCAGCCGACCGGACGGCATGCACCAGCGCTCCTACTCCGTCTCCAGTGCCGACCAGTGGAGCGAGGCTGCAGTCATTGCAAACTTGGCCATCAGCAGTGACACAGGGCTGGGTGACTCCGTGTGCTCCAGCCCAAGTATCTCCAGCTCCACCAGCCCCAAGCTCGACCCGCCACCCTCCCCCCACGCCAACAGAAAGAAGCACCGGAGGAAGAAAAGTACCAGCAACTTCAAAGCCGACGGGCTCTCAGGCACAGCTGAAGAACAAGAAGAAAACTTTGAGTTCATCATTGTGTCCCTCACTGGCCAGACGTGGCACTTTGAAGCCACCACGTATGAAGAGCGAGATGCGTGGGTCCAAGCCATCGAGAGCCAGATCCTCGCCAGCCTGCAGTCCTGCGAGAGCAGCAAGAATAAGTCCCGGCTGACCAGCCAGAGTGAGGCCATGGCCCTGCAGTCCATCCGGAACATCCGCGGGAACTCCCACTGCGTGGACTGCGACACCCAAAACCCTAACTGGGCCAGCTTGAACTTGGGCGCCCTCATGTGCATCGAGTGCTCGGGGATCCACCGGAACCTGGGCACCCACCTGTCCCGGGTGCGCTCCCTGGACCTGGACGACTGGCCCATCGAGCTCATCCAGGTGATGTCATCCATCGGCAACGAGTTGGCCAACAGCGTGTGGGAGGAGAGCAGCCGGGGCCGGTCCAAGCCCTCCCTGGACTCCCCCAGGGAAGAGAAGGAGCGATGGATCCGGGCAAAGTACGAGCAGAAGCTCTTCCTGGCCCCACTGCCATGCACAGAGCTGTCCCTGGGCCAGCACCTGCTGCGTGCCACCGCCGATGAGGACCTGAGGACAGTCATCCTGCTGCTGGCGCACGGCTCCCGGGACGAGGTGAACGAGACTTGCGGAGAGAGCGACGGCCGCACAGCTCTGCACTTGGCCTGCCGCAAGGGCAACGTGGTACTGGCCCAGCTGCTCATCTGGTACGGGGTGGATGTCATGACCCGAGATGCACAAGGGAACACGGCACTGGCCTATGCCCGGCAGGCATCCAGCCAGGAGTGCATCGACGTGCTGCTGCAGTACGGCTGCCCTGACGAGCGCTTTGTGCTCATGGCCACCCCCAACCTATCCCGGAAGAACAACAACCGGAACAACAGCAGTGGCAGGGTGCCCAGCATCATCTGA

Related Sequences

XP_004868435.1 Protein

Agap1 PREDICTED: arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X4 [Heterocephalus glaber]

Length: 857 aa      View alignments
>XP_004868435.1
MNYQQQLANSAAIRAEIQRFESVHPNIYSIYELLERVEEPVLQNQIREHVIAIEDAFVNSQEWTLSRSVPELKVGIVGNLASGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPEAQFAMWVDAVIFVFSLEDEISFQTVYHYYSRMANYRNTSEIPLVLVGTQDAISSTNPRVIDDARARKLSNDLKRCTYYETCATYGLNVERVFQDVAQKIVATRKKQQLSIGPCKSLPNSPSHSSVCSAQVSAVHMSQTSNGGGSLSDYSSSVPSTPSTSQKELRIDVPATANTPTPVRKQSKRRSNLFTSRKGSDPDKEKKGLESRADSIGSGRAIPIKQGMLLKRSGKSLNKEWKKKYVTLCDNGVLTYHPSLHDYMQNVHGKEIDLLRTTVKVPGKRPPRATSACAPISSPKTNGLSKDVSSLHISPNSGNVTSAPGSQMASGIGLVSFSSRPDGMHQRSYSVSSADQWSEAAVIANLAISSDTGLGDSVCSSPSISSSTSPKLDPPPSPHANRKKHRRKKSTSNFKADGLSGTAEEQEENFEFIIVSLTGQTWHFEATTYEERDAWVQAIESQILASLQSCESSKNKSRLTSQSEAMALQSIRNIRGNSHCVDCDTQNPNWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLDDWPIELIQVMSSIGNELANSVWEESSRGRSKPSLDSPREEKERWIRAKYEQKLFLAPLPCTELSLGQHLLRATADEDLRTVILLLAHGSRDEVNETCGESDGRTALHLACRKGNVVLAQLLIWYGVDVMTRDAQGNTALAYARQASSQECIDVLLQYGCPDERFVLMATPNLSRKNNNRNNSSGRVPSII