Sequence details NCBI ID: XM_004868335.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Trappc12
Gene Name trafficking protein particle complex 12, transcript variant X2
Entrez Gene ID 101715802

Database interlinks

Part of NW_004624846.1 (Scaffold)

For more information consult the page for NW_004624846.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TRAPPC12 ENSCPOG00000005749 (Guinea pig)

Gene Details

trafficking protein particle complex 12

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005184, Guinea pig)

Protein Percentage 86.4%
CDS Percentage 86.61%
Ka/Ks Ratio 0.15076 (Ka = 0.0755, Ks = 0.5009)

TRAPPC12 ENSG00000171853 (Human)

Gene Details

trafficking protein particle complex 12

External Links

Gene Match (Ensembl Protein ID: ENSP00000324318, Human)

Protein Percentage 77.14%
CDS Percentage 76.19%
Ka/Ks Ratio 0.07975 (Ka = 0.1407, Ks = 1.7639)

Trappc12 ENSMUSG00000020628 (Mouse)

Gene Details

trafficking protein particle complex 12

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000020954, Mouse)

Protein Percentage 82.37%
CDS Percentage 79.81%
Ka/Ks Ratio 0.09343 (Ka = 0.1018, Ks = 1.0901)

Trappc12 ENSRNOG00000009039 (Rat)

Gene Details

Protein Trappc12

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000029577, Rat)

Protein Percentage 81.99%
CDS Percentage 79.64%
Ka/Ks Ratio 0.08905 (Ka = 0.1024, Ks = 1.1504)

Genome Location

Sequence Coding sequence

Length: 2394 bp    Location: 5249315..5211359   Strand: -
Raw sequence   
>XM_004868335.1
ATGGAGAACGGTAAATGTGGTGAGCAGGGCATGAAGGAGGCGTCTCCCTTGGCCCTGGTGGAAGCTGAGAGCGTGGTTCCCCAGGAGGAGCAGGGCCAGCTTCTGTACCACGAGGAGACCATTGATCTCGGTGGAGATGAGTTCGGGTCCGAGGAGAATGAGACAATATCCGAAGACTCGAACAACTTCGCCGATAAGCTCAGTGAGCACCTGATGGAGAGTGTGCTTATCTCGGACTCGCCCAACAACAGCGAAGACGATGGCGGTGAGCTTGGCTGCTTGCGGGATGTGGTGGAGCCCCTAGAAGGCACCACTGATCACGGACTGGACGGTGTCACAGATAAGGAAGAGATGGACACTCTGAGTCCTGACAGTGACACTGATGGAGACGGAGACGACACCCCTCGAGACGCATCAGACGCCACTCCCGACAGCAGAGCATCTTTGAGAGAAGATTCCACCCAAGAGGAAGCCACGGGGCAGCCTGCGTTGGAGGACAGCAACCTACAGGACTTGGTGCCCGGGGAGGAGAAGGCTCACCTGGAAGAGCAGGTGTCGGAAGTGTCTTCCGGTTCGGGCCAGTCTCCCAAAGACGAGCCGGTGCCTGTGTGCACCATCTTCAGCCAGGCGAACCCGGCTGGCTCCCAGCCCCACCTGTTCCTGCAGGACGGCTTTGAGTCTCAGATGGTGAAATCACCAAGCTTCAGCAGTGCCAGCGAGGCATCTGCCAAGACCCCTCCTCAGGTGGTCCAGCCCAGCCCCAGCCTGAGTAAATTTTTTGGAGATACGATCAGCACAAATTCTCTGGCCTCTGACTTCTTCGATTCCTTCACCACTTCTACCTTCATTTCTGTTAGTAACCCCAACGCAGGCGCCTCGGTCCCAGAAGAGTTGTCTTCTCTCACCACACCGCTGGGAGACAGATCCCCCGATTCTGCCACTTCATCTTACTCTGCAGGAATGGAAAGATCAGAATTGGGGCTTTCTACGGCTTCCCTGGAAATCCCCGAGTCCCCGAAACCGTTTGCACAGATCCAGGCTGTCTTTGGAGGGAGGGATGACCCCTTTGCCACGGCCTTGAGCATGAGCGAAATGGACCGCAGGAGTGATGCCTGGCTCCCCAGCCCGGGGACCAGCAGCGTCCTGATCTCCCTAGCAGCCCAGCAGTACAGCACTGTGTTCGTGGACAAGGACAACCTCACCATGCCAGGCCTCAAGTTCGACAACATTCAGGGAGACGCCGTGAAAGACCTGATGCTCCGCTTCTTGGGCGAGAAGGCTGCTGCCAAGAGGCAGGTGCTGACCGCCGGCTCGGTGGAGCAGTCCTTCGTGGGCCTGAGGCAGCTCATCAACTGCAGGAACTGGAGGGCCGCTGTCGACCTGTGCGGACGCCTCCTCACTGCCCACGGCCAGGGCTACGGCAAGAGCGGGCTGCCCACCAGCCACACGACAGACTCGCTGCAGCTTTGGTTTGTCCGGCTGGCACTGCTGGTGAAGCTGGGGCTCTTCCAGAACGCCGAGATGGAATTCGAGCCCTTCGGGAATCTGGACCAGCCAGACCTGTACTACGAGTACTACCCGCACGTGTACCCTGGGCGCAGGGGCTCCATGGTGCCTTTCTCCATGCGCATCCTGCACGCAGAGCTGCAGCAGTACCTGGGCAGCCCTCAGGAGTCGCTGGACAGACTGCACCGGGTCAAGACTGTCTGCAGCCAGATCCTGGAGAACCTGGAACAGGGCCTGGCAGAGGACGGGGGCCTGAGCAGTGTCACCCTGGAGAGCAGGCAAGCGTCCGTGCAGCTGTGGCGGGCGCGCCTGGGCCGGGTGCTGTACTCCATGGCCAACTGCCTCCTCCTCATGAAGGAGTACGTGCTGGCCGTGGACGCCTACCGTGCCGTCATCCAATACTACCCTGATCAGGAGCCGCAGCTGCTGAGCGGCATCGGCCGCATCCTCCTCCAGATCGGAGACATAAAAACAGCCGAGAAGTATTTCCAAGACGTGGAGAAAGTCGCGCAGAAACTGGACAGGCCGCAGGGTAAAACCATGGTTCTGATGAACAGGGCCTTCTTGCACCTCGGCCAGAACAACTTCGCAGAAGCCCACCGGTTCTTCACGGAGATCCTCAGGTTGGACCCCGCCAATGCAGTGGCCAACAACAATGCTGCCGTGTGCCTGCTGTACCTGGGCAAGCTCAAGGACTCACTGCGGCAGCTGGAGGCCATGGTGCGGCAGGACCCAAGGCACTACCTGCATGAGAGCGTGCTCTTCAACCTCACCACCATGTATGAACTGGAGTCCTCACGGAGCATGCAGAAGAAGCAGAGCCTGCTCGAGGCTGTGGCCAACAAGGAGGGTGACAGCTTCAACACACAGTGCCTCAAGCTGGCCTAG

Related Sequences

XP_004868392.1 Protein

Trappc12 PREDICTED: trafficking protein particle complex subunit 12 isoform X2 [Heterocephalus glaber]

Length: 797 aa      View alignments
>XP_004868392.1
MENGKCGEQGMKEASPLALVEAESVVPQEEQGQLLYHEETIDLGGDEFGSEENETISEDSNNFADKLSEHLMESVLISDSPNNSEDDGGELGCLRDVVEPLEGTTDHGLDGVTDKEEMDTLSPDSDTDGDGDDTPRDASDATPDSRASLREDSTQEEATGQPALEDSNLQDLVPGEEKAHLEEQVSEVSSGSGQSPKDEPVPVCTIFSQANPAGSQPHLFLQDGFESQMVKSPSFSSASEASAKTPPQVVQPSPSLSKFFGDTISTNSLASDFFDSFTTSTFISVSNPNAGASVPEELSSLTTPLGDRSPDSATSSYSAGMERSELGLSTASLEIPESPKPFAQIQAVFGGRDDPFATALSMSEMDRRSDAWLPSPGTSSVLISLAAQQYSTVFVDKDNLTMPGLKFDNIQGDAVKDLMLRFLGEKAAAKRQVLTAGSVEQSFVGLRQLINCRNWRAAVDLCGRLLTAHGQGYGKSGLPTSHTTDSLQLWFVRLALLVKLGLFQNAEMEFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGSPQESLDRLHRVKTVCSQILENLEQGLAEDGGLSSVTLESRQASVQLWRARLGRVLYSMANCLLLMKEYVLAVDAYRAVIQYYPDQEPQLLSGIGRILLQIGDIKTAEKYFQDVEKVAQKLDRPQGKTMVLMNRAFLHLGQNNFAEAHRFFTEILRLDPANAVANNNAAVCLLYLGKLKDSLRQLEAMVRQDPRHYLHESVLFNLTTMYELESSRSMQKKQSLLEAVANKEGDSFNTQCLKLA