Sequence details NCBI ID: XM_004868326.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Colec11
Gene Name collectin sub-family member 11, transcript variant X1
Entrez Gene ID 101713454

Database interlinks

Part of NW_004624846.1 (Scaffold)

For more information consult the page for NW_004624846.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COLEC11 ENSCPOG00000010999 (Guinea pig)

Gene Details

collectin sub-family member 11

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009887, Guinea pig)

Protein Percentage 92.62%
CDS Percentage 90.04%
Ka/Ks Ratio 0.09964 (Ka = 0.0438, Ks = 0.4396)

COLEC11 ENSG00000118004 (Human)

Gene Details

collectin sub-family member 11

External Links

Gene Match (Ensembl Protein ID: ENSP00000411770, Human)

Protein Percentage 87.08%
CDS Percentage 86.35%
Ka/Ks Ratio 0.09707 (Ka = 0.0667, Ks = 0.6877)

Colec11 ENSMUSG00000036655 (Mouse)

Gene Details

collectin sub-family member 11

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000049285, Mouse)

Protein Percentage 88.19%
CDS Percentage 83.15%
Ka/Ks Ratio 0.07016 (Ka = 0.0661, Ks = 0.9419)

Colec11 ENSRNOG00000008373 (Rat)

Gene Details

Protein Colec11

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000011290, Rat)

Protein Percentage 88.45%
CDS Percentage 82.79%
Ka/Ks Ratio 0.06138 (Ka = 0.0627, Ks = 1.022)

Genome Location

Sequence Coding sequence

Length: 834 bp    Location: 5182483..5173292   Strand: -
Raw sequence   
>XM_004868326.1
ATGAAGAGTGACCTGGCCCTCGCAGGAGCGCTGCTCGGCCTGGCCCTCCTGTCACTGCCACCGCCCGCACGCCCCCAACTGGCCGCAGAAGACGCCTGCTCCGTGCAGATCCTGGTGCCCGGCCTCAAAGGGGACTTGGGAGAGAAGGGGGACAAAGGCGCCCCAGGACGGCCTGGAAGAGTCGGTCCTACGGGAGAGAAAGGAGACCCGGGGGACAAAGGACAGAAAGGTGTTGTAGGTCGCCATGGGAAAATTGGTCCAATTGGTGCTAAAGGTGACAAAGGTGAGATGGGTGACGTAGGACCCCCCGGCCCCAACGGAGAACCAGGCCTCCCGTGCGAGTGCAGCCAGCTCAGGAAGGCCATCGGTGAGATGGACAACCAGGTCACCCAGCTGACCACTGAGTTAAAGTTCATCAAAAACGCCCTGCCCTCCCCCGCAGCTGTCGCCGGCGTGCGCGAGACGGACAGCAAGATCTACCTGCTGGTAAAGGAGGAGAAGCGCTACGCTGACGCGCAGCTGGCGTGCCAGGGCCGCGGGGGCACGCTGGGCATGCCCAAGGACGAGGCGGCCAACGGGCTGATGGCCGCCTACCTGGTGCAGGCCGGCCTGGCCCGCGTCTTCATCGGCATCAACGACCTAGAGCGCGAGGGCGCCTTCGTGTACTCCGACCGCTCCCCCATGCAGACCTTCAGCAAGTGGCGCAGTGGGGAGCCCAACAACGCCTACGACGAGGAGGACTGCGTGGAGATGGTGGCCTCTGGGGGCTGGAACGACGTGGCCTGCCACATCACCATGTACTTTATGTGCGAGTTCGACAAGGAGAGCATGTGA

Related Sequences

XP_004868383.1 Protein

Colec11 PREDICTED: collectin-11 isoform X1 [Heterocephalus glaber]

Length: 277 aa      View alignments
>XP_004868383.1
MKSDLALAGALLGLALLSLPPPARPQLAAEDACSVQILVPGLKGDLGEKGDKGAPGRPGRVGPTGEKGDPGDKGQKGVVGRHGKIGPIGAKGDKGEMGDVGPPGPNGEPGLPCECSQLRKAIGEMDNQVTQLTTELKFIKNALPSPAAVAGVRETDSKIYLLVKEEKRYADAQLACQGRGGTLGMPKDEAANGLMAAYLVQAGLARVFIGINDLEREGAFVYSDRSPMQTFSKWRSGEPNNAYDEEDCVEMVASGGWNDVACHITMYFMCEFDKESM