Sequence details NCBI ID: XM_004868273.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pcf11
Gene Name PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae), transcript variant X2
Entrez Gene ID 101717641

Database interlinks

Part of NW_004624845.1 (Scaffold)

For more information consult the page for NW_004624845.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PCF11 ENSCPOG00000004103 (Guinea pig)

Gene Details

PCF11 cleavage and polyadenylation factor subunit

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003702, Guinea pig)

Protein Percentage 97.54%
CDS Percentage 95.93%
Ka/Ks Ratio 0.07835 (Ka = 0.0119, Ks = 0.1517)

PCF11 ENSG00000165494 (Human)

Gene Details

PCF11 cleavage and polyadenylation factor subunit

External Links

Gene Match (Ensembl Protein ID: ENSP00000298281, Human)

Protein Percentage 95.93%
CDS Percentage 93.76%
Ka/Ks Ratio 0.07316 (Ka = 0.0184, Ks = 0.2515)

Pcf11 ENSMUSG00000041328 (Mouse)

Gene Details

cleavage and polyadenylation factor subunit homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000113717, Mouse)

Protein Percentage 93.02%
CDS Percentage 91.21%
Ka/Ks Ratio 0.10003 (Ka = 0.0342, Ks = 0.3423)

Pcf11 ENSRNOG00000009891 (Rat)

Gene Details

Protein Pcf11

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000013552, Rat)

Protein Percentage 93.41%
CDS Percentage 91.54%
Ka/Ks Ratio 0.09753 (Ka = 0.0324, Ks = 0.3319)

Genome Location

Sequence Coding sequence

Length: 4653 bp    Location: 6736773..6712401   Strand: -
Raw sequence   
>XM_004868273.1
ATGTCAGAGCAGACGCCGGCCGAGGCCGGTCCTGCGGGGGCCCGGGAGGACGCCTGTCGGGATTATCAATCATCGCTGGAAGACCTGACCTTCAATAGCAAACCGCACATCAATATGCTGACCATTCTAGCCGAGGAGAACCTGCCCTTCGCCAAGGAGATCGTCTCTCTCATCGAGGCCCAAACCGCCAAGGCTCCTTCCTCAGAGAAGCTTCCGGTTATGTACCTTATGGATTCAATTGTGAAAAACGTTGGAAGAGAGTATCTCACTGCCTTTACTAAAAATCTAGTTGCAACATTTATTTGTGTGTTTGAAAAGGTGGATGAAAATACCAGAAAAAGTTTATTTAAATTACGTTCTACATGGGATGAAATATTCCCTTTGAAGAAACTTTATGCCCTGGATGTCAGAGTCAATTCATTAGATCCTGCGTGGCCTATTAAACCTCTACCCCCCAATGTGAATACATCCAGCATCCATGTGAATCCCAAATTTTTAAATAAGTCGCCCGAGGAGCCTTCAACACCTGGCTCAGTGGTCAGTTCCCCCAGCATCTCCACTCCTCCAATTGTTCCTGATATACAAAAGAATCTTACCCAAGAACAACTAATAAGGCAACAGTTACTGGCAAAACAAAAACAGTTGTTAGAACTTCAGCAGAAAAAGCTGGAGTTGGAGCTAGAGCAAGCTAAGGCACAACTGGCAGTTTCTCTTGGTGTTCAGCCTGAGACATCCAACTTGGGTCCTGGATCTGCACCATCCAAATTACATGTTTCACAAATTCCTGCTATGGCGGTTAAAGCTCCCCATCAGGTTCCTGTGCAACCTGAGAAAAACCGTCCAGGTCCGTCCTTACAAATTCAGGATTTGAAAGGAACTAACCGAGATCCCCGTCTTAACAGGATGAGCCAACATTCTTCTCATGGAAAAGATCAGAGTCACAGAAAAGAATTCCTAATGAACACATTGAATCAGTCTGATATTAAAACAGGTAAAGCTGTACCCTCTGAAAAACTAAACTCATCCAAGCAAGAAAAAAGTAAATCAGGTGAAAAAGTAATCAAGAAAGAACTTGATCAGTTAGATTCTAAATCTAAATCTAAATCTAAATCGCCGTCACCCTTGAAAAACAAACTGTCCCATACAAAAGACTTGAAAAGTCAAGAGTCTGAAAGTGTGAGGTTGTCTGATATGAACAAAAGAGATCCAAGATTAAAAAAACATCTTCAGGATAAGACTGATGGCAAAGATGATGATGTAAAAGAAAAGAGAAAAACTGCAGAAAAAAAGGATAAAGATGAGCACATAAAATCATCTGAACACCGACTGATTGGAAGTAGAAATAAAATCATAAATGGTGTTGTACAAAAACAGGATACAATAATAGAAGAATCAGAGAAACAGGGGACAAAACCTGGGAGATCGAGCACTAGAAAACGTTCAAGGTCGAGATCACCCAAGTCTCGGTCACCGATTATACATTCCCCAAAGAGAAGAGATAGGCGGTCACCTAAACGAAGACAAAGAAGTATGTCTCCAACTTTAATACCCAAAGCTGGAAAGATTCGCCAGTCAGGAGTTAAGCAGTCACATATGGAAGAGTTTACACCACCTTCCAGGGAAGAAAGAAATGCAAAGAGAAGTACTAAACAAGATGTTCGAGATCCAAGACGAATGAAAAAGACTGAAGAGGAACGACCACAAGAGATTGCAAATCAGCATTCTACAAAATCGGGTACTGAACCTAAGGAGAATATAGAAAATTGGCAAAGTTCTAAGTCTACCAAAAGATGGAAATCTGGTTGGGAAGAAAATAAAAGCTTACAACAGGGGGATGAACATAGTAAATCTCCTCACCTAAGGCATAGGGAAAGCTGGTCAAGCACCAAAGGAATCTTGTCACCTCGGGCCCCAAAGCAGCAGCATCGATTAAGTGTAGATGCCAATCTTCAGATTCCTAAAGAGTTAACACTTGCAAGCAAAAGAGAATTACTTCAAAAGACGAGTGAACGTTTAGCATCTGGTGAAATTACACAGGATGAGTTCCTTGTTGTTGTGCATCAAATTCGCCAGCTATTTCAGTATCAAGAAGGTGTGCGAGAAGAGCAGAGATCTCCATTCAATGATCGTTTTCCACTTAAGCGACCTAGATACGAAGACTCAGATAAACCATTTGTAGATAGCCCAGCATCAAGATTTGCTGGCCTTGATACAAATCAACGACTTACAGCTTTAGCTGAAGACAGACCATTATTTGATGGACCTACTAGGCCATCGGTATCAAGAGATGGCCCAACCAAGATGATTTTTGAAGGACCTAATAAATTAAGCCCTAGAATTGATGGACCTCCTACACCAGGTTCTCTTCGGTTTGATGGGTCACCTGGCCAGATGGGGGGAGGAGGCCCTTTGAGATTTGAAGGACCACAAGGTCAACTAGGAGGTGGGTGTCCTTTGAGATTTGAAGGTCCTCCAGGACCAGTAGGGACGCCTCTGAGGTTTGAGGGACCAATTGGTCAAGCAGGAGGAGGTGGTTTTCGGTTTGAAGGATCCCCTGGTATGAGGTTTGAGGGATCTGCAGGTGGTTTGCGATTTGAAGGACCAGGGGTTCAGCCTGTGGGAGGTCTCAGGTTTGAAGGACATCGTGGTCAACCTGTGGGTAGTCTAAGGTTTGAGGGACCTCATGGTCAACCTGTGGGTGGTCTTAGATTTGATAATCCCCGAGGCCAGCCTGTAGGTGGTCTTAGATTTGAAGGGGGTCATGGTCCATCAGGGGGTGCAATTAGGTTTGATGGACCTCATGGTCAGCCAGGAAGTGGGATCAGATTTGAGGGGCCTTTGCTTCAGCAAGGAGTTGGGATGAGGTTTGAGGGGCCCCATGGTCAGTCAGTAGGTGGTCTGAGATTTGAAGGACAACATAATCAGCTGAGGTTCGATGGTCCACATGGTCAGCCAGGAGTTGGGATCAGGTTTGACGGACCTTTAGTACAACAAGGAGGTGGAATGAGGTTTGAGGGTCCTGTACCAGGAGGTGGCCTGAGAATTGAAGGGCCTCTGGGTCAAGGTGGTCCAAGATTTGAAGGTTGTCATGCTTTAAGGTTTGATGGGCAGCCAGGTCAGCCATCTCTCTTGCCAAGATTTGATGGATTACATGGCCAGCCAGGTCCTAGATTTGAAAGAACTGGTCAACCAGGCCCTCAGAGGTTTGATGGACCACCTGGACAGCAAGTTCAACCAAGATTTGATGGAATACCTCAGAGATTTGATGGTCCACAACACCAGCAAGCATCAAGGTTTGATATTCCTCTTGGTCTACAAGGCACACGATTTGACAATCATCCTTCACAGAGGCTTGAATCAGTGTCTTTCAATCAGACTGGTCCATATAATGATCCACCTGGCAGTGCTTTTAATACCCCATCCCAAGGACTGCAGTTCCAAAGACATGAACAGATATTTGATTCACCTCAAGGACCAAATTTTAATGGACCACATGGTCCTGGAAACCAGAATTTCTCAAATCCCCTTAACAGAGCTTCTGGACACTATTTTGATGAAAAGAATCTTCACGGTTCTCAGTTTGGAAACTTTGGCAGTTTACCTGCTCCAATGTCAGTAGGAAATATTCAAGCATCTCAGCAGGTTCTGACTGGTGTTGCGCAACCAGTAGCATTTGGCCAAGGACAACAGTTTTTACCAGTTCATCCACAAAATCCTGGAGCATTTGTTCAGAATCCTTCAGGTGCTCTTCCTAAGGCATATCCTGATAATCATCTCAGTCAAGTGGATGTAAATGAATTGTTTTCAAAACTGCTAAAAACAGGAATTCTCAAATTATCCCAGCCTGATTCTGCCACAACACAAGTAAATGAAGTTGCTGCTCAGCCTCCCCCTGAAGAAGACGAAGATCAAAATGAAGATCAAGATGTTCCAGATCTTACTAATTTTACAGTTGAAGAATTGAAACAACGTTATGACAGTGTTATAAACCGGCTGTACACTGGTATTCAGTGTTATTCTTGTGGAATGAGGTTTACAACGTCACAGACAGATGTATATGCAGATCACTTGGACTGGCATTATCGACAAAATAGAACTGAGAAGGATGTTAGCAGGAAAGTCACTCATAGACGATGGTACTACAGTTTAACAGACTGGATAGAATTTGAGGAGATAGCTGACCTGGAAGAACGGGCAAAAAGCCAGTTTTTTGAAAAGGTACATGAAGAAGTTGTGCTCAAAACTCAGGAGGCTGCTAAAGAAAAAGAGTTCCAAAGTGTACCTGCTGGACCAGCTGGAGCAGTTGAGAGTTGTGAAATCTGCCAAGAACAATTTGAACAGTACTGGGATGAAGAAGAAGAGGAGTGGCACTTAAAAAATGCTATTAGAGTGGATGGAAAGATTTATCATCCATCATGTTATGAAGATTATCAAAATACATCTTCATTTGATTGTACACCATCTCCCAGCAAGACACCGGTTGAAAATCCTTTGAACATTATGTTGAACATTGTCAAAAACGAGTTGCAGGAACCCTGTGAAAGTCCCAAAGTTAAGGAAGAACAAATTGATACCCCACCAGCTTGTACAGAGGAAAGCATAACAACATCCCCTGAAATTAAAACAGAAAATGATACAGTCGAGTCAGTTTGA

Related Sequences

XP_004868330.1 Protein

Pcf11 PREDICTED: pre-mRNA cleavage complex 2 protein Pcf11 isoform X2 [Heterocephalus glaber]

Length: 1550 aa      View alignments
>XP_004868330.1
MSEQTPAEAGPAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGSVVSSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLGVQPETSNLGPGSAPSKLHVSQIPAMAVKAPHQVPVQPEKNRPGPSLQIQDLKGTNRDPRLNRMSQHSSHGKDQSHRKEFLMNTLNQSDIKTGKAVPSEKLNSSKQEKSKSGEKVIKKELDQLDSKSKSKSKSPSPLKNKLSHTKDLKSQESESVRLSDMNKRDPRLKKHLQDKTDGKDDDVKEKRKTAEKKDKDEHIKSSEHRLIGSRNKIINGVVQKQDTIIEESEKQGTKPGRSSTRKRSRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTLIPKAGKIRQSGVKQSHMEEFTPPSREERNAKRSTKQDVRDPRRMKKTEEERPQEIANQHSTKSGTEPKENIENWQSSKSTKRWKSGWEENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLASKRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPTRPSVSRDGPTKMIFEGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGMRFEGSAGGLRFEGPGVQPVGGLRFEGHRGQPVGSLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGGAIRFDGPHGQPGSGIRFEGPLLQQGVGMRFEGPHGQSVGGLRFEGQHNQLRFDGPHGQPGVGIRFDGPLVQQGGGMRFEGPVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGPQRFDGPPGQQVQPRFDGIPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGSAFNTPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQNFSNPLNRASGHYFDEKNLHGSQFGNFGSLPAPMSVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQNPSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPPEEDEDQNEDQDVPDLTNFTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEEQIDTPPACTEESITTSPEIKTENDTVESV