Details from NCBI annotation

Gene Symbol Pde1a
Gene Name phosphodiesterase 1A, calmodulin-dependent, transcript variant X5
Entrez Gene ID 101712147

Database interlinks

Part of NW_004624844.1 (Scaffold)

For more information consult the page for NW_004624844.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PDE1A ENSCPOG00000004164 (Guinea pig)

Gene Details

phosphodiesterase 1A, calmodulin-dependent

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003756, Guinea pig)

Protein Percentage 94.08%
CDS Percentage 91.52%
Ka/Ks Ratio 0.12093 (Ka = 0.0363, Ks = 0.2999)

PDE1A ENSG00000115252 (Human)

Gene Details

phosphodiesterase 1A, calmodulin-dependent

External Links

Gene Match (Ensembl Protein ID: ENSP00000410309, Human)

Protein Percentage 92.25%
CDS Percentage 89.29%
Ka/Ks Ratio 0.10783 (Ka = 0.044, Ks = 0.4083)

Pde1a ENSMUSG00000059173 (Mouse)

Gene Details

phosphodiesterase 1A, calmodulin-dependent

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000099715, Mouse)

Protein Percentage 90.74%
CDS Percentage 84.94%
Ka/Ks Ratio 0.06447 (Ka = 0.0489, Ks = 0.7583)

Pde1a ENSRNOG00000006154 (Rat)

Gene Details

phosphodiesterase 1A, calmodulin-dependent (Pde1a), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000008872, Rat)

Protein Percentage 90.3%
CDS Percentage 85.04%
Ka/Ks Ratio 0.07568 (Ka = 0.0534, Ks = 0.7061)

Genome Location

Sequence Coding sequence

Length: 1590 bp    Location: 4114251..3898998   Strand: -
>XM_004868174.1
ATGGATGACCATGTCACCATCAGGAAGAAACATCTCCAAAGACCCATCTTTCGACTAAGATGCTTAGTGAAGCAGCTTGAAAAAGGTGATGTCAATGTCGTAGACTTAAAAAAGAATATTGAATATGCAGCATCAGTGTTGGAAGCAGTTTATATCGATGAAACAAGAAGATTGCTCGACACTGAAGATGAGCTCAGTGACATTCAGACTGACTCGGTCCCATCGGAAGTCCGCGACTGGTTGGCTTCTACCTTTACACGGAAAATGGGGATGACAAAAAAGAAGCCAGAGGAAAAACCTAAATTCCGAAGCATTGTGCATGCTGTCCAGGCAGGAATTTTCGTGGAAAGGATGTACAGAAAAAGCTATCACATGGTTGGTTTGGCATATCCAGCAGCTGTCATAGTAACATTAAAGGATGTTGATAAATGGTCTTTTGATGTATTTTCCCTAAATGAAGCAAGTGGCGAACATAGTCTGAAGTTTATGATTTATGAACTGTTTACCAGATATGATCTTATGAACCGCTTCAAGATTCCTGTTTCTTGCCTAATTGCCTTTGCAGAAGCTTTAGAAGTTGGTTACAGCAAGTACAAGAATCCGTATCACAATTTGATTCATGCAGCTGATGTCACACAAACTGTGCATTACATAATGCTCCACACGGGTATCATGCACTGGCTCACTGAACTGGAAATTTTAGCAATGGTCTTTGCTGCTGCCATTCATGATTATGAGCATACAGGGACCACAAACAACTTTCATATTCAGACAAGATCAGATGTTGCCATTTTGTACAACGATCGCTCTGTCCTTGAGAATCATCATGTGAGTGCAGCTTATCGCCTTATGCAAGAAGAAGAAATGAATATCTTGATAAATTTATCCAAAGATGACTGGAGGGATCTTCGGAACTTAGTCATTGAAATGGTATTATCTACAGATATGTCCGGTCACTTCCAGCAGATTAAAAATATAAGGAACAGTTTGCAGCAGCCTGAAGGGCTTGACAGAGCCAAGACCATGTCCCTGATTCTCCATGCGGCAGACATCAGCCACCCAGCCAAATCCTGGAGGCTGCACTACAGGTGGACCACGGCCCTCATGGAGGAGTTTTTCCTACAGGGAGATAAAGAAGCTGAACTGGGACTTCCATTTTCCCCACTTTGTGATCGCAAGTCAACGATGGTGGCCCAGTCACAAATAGGTTTCATTGATTTCATAGTAGAGCCAACATTTTCTCTTCTGACAGACTCAACAGAGAAAATTGTTATTCCTCTTATAGAGGAAGCCTCAAAAGCCGAAAGTCCTAACTATGGAGCGAGCAGCTCAGCCACCCTCGTGGGACTGCACATTGCCGATTCCATGAGACGCTCAAACATGAAGGGCTGCGTGAGTGACGGCAGCTGCTCCCCGGACTACTCGCTGGCCGCCGTGGACCTCAAGAGCTTCAAGAACAACCTGATGGACATCATCCAGCAGAACAAGGAACGCTGGAAGGAGCTGGCCGCGCAAGGTGAACTTGGTCTTCATAAGAACTCAGAAGACTTAGCAAACACTGAAGAAAAACATTCTGACACACATCTGTAG

Related Sequences

XP_004868231.1 Protein

Pde1a PREDICTED: calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X5 [Heterocephalus glaber]

Length: 529 aa      View alignments
>XP_004868231.1
MDDHVTIRKKHLQRPIFRLRCLVKQLEKGDVNVVDLKKNIEYAASVLEAVYIDETRRLLDTEDELSDIQTDSVPSEVRDWLASTFTRKMGMTKKKPEEKPKFRSIVHAVQAGIFVERMYRKSYHMVGLAYPAAVIVTLKDVDKWSFDVFSLNEASGEHSLKFMIYELFTRYDLMNRFKIPVSCLIAFAEALEVGYSKYKNPYHNLIHAADVTQTVHYIMLHTGIMHWLTELEILAMVFAAAIHDYEHTGTTNNFHIQTRSDVAILYNDRSVLENHHVSAAYRLMQEEEMNILINLSKDDWRDLRNLVIEMVLSTDMSGHFQQIKNIRNSLQQPEGLDRAKTMSLILHAADISHPAKSWRLHYRWTTALMEEFFLQGDKEAELGLPFSPLCDRKSTMVAQSQIGFIDFIVEPTFSLLTDSTEKIVIPLIEEASKAESPNYGASSSATLVGLHIADSMRRSNMKGCVSDGSCSPDYSLAAVDLKSFKNNLMDIIQQNKERWKELAAQGELGLHKNSEDLANTEEKHSDTHL