Sequence details NCBI ID: XM_004867978.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Col4a3
Gene Name collagen, type IV, alpha 3 (Goodpasture antigen), transcript variant X1
Entrez Gene ID 101709004

Database interlinks

Part of NW_004624843.1 (Scaffold)

For more information consult the page for NW_004624843.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL4A3 ENSCPOG00000024822 (Guinea pig)

Gene Details

collagen, type IV, alpha 3 (Goodpasture antigen)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000017867, Guinea pig)

Protein Percentage 84.84%
CDS Percentage 88.4%
Ka/Ks Ratio 0.46636 (Ka = 0.0984, Ks = 0.2111)

COL4A3 ENSG00000169031 (Human)

Gene Details

collagen, type IV, alpha 3 (Goodpasture antigen)

External Links

Gene Match (Ensembl Protein ID: ENSP00000379823, Human)

Protein Percentage 81.25%
CDS Percentage 85.52%
Ka/Ks Ratio 0.40122 (Ka = 0.1208, Ks = 0.301)

Col4a3 ENSMUSG00000079465 (Mouse)

Gene Details

collagen, type IV, alpha 3

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000109084, Mouse)

Protein Percentage 78.79%
CDS Percentage 80.97%
Ka/Ks Ratio 0.27544 (Ka = 0.1465, Ks = 0.532)

Col4a3 ENSRNOG00000015365 (Rat)

Gene Details

collagen, type IV, alpha 3 (Col4a3), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000020669, Rat)

Protein Percentage 77.31%
CDS Percentage 80.14%
Ka/Ks Ratio 0.30075 (Ka = 0.1609, Ks = 0.5349)

Genome Location

Sequence Coding sequence

Length: 5013 bp    Location: 1486673..1625080   Strand: +
Raw sequence   
>XM_004867978.1
ATGCGTCCCGAGTGCGCGTCCCGGCCGCCCGCGCGTCTGCAGTGGCTCCTCCTGCTGCTCCTGGCGGCCGCGCCCGCCGACTGCAAGGGATGTGCCTGTACAGACAAAGGCCAGTGTTTCTGCAGTGGGGCCAAAGGCGAGAAGGGGGAGAAAGGCTTCCCTGGACCCCCTGGTTCTCCAGGCCAGAAAGGATTCCCAGGTCCAGAAGGCCTTCCTGGACCGCAGGGACCCAAGGGCTCTCCAGGACTCCCAGGATTCACTGGTCCCAAAGGTGTAAGGGGAATAACTGGATTACCAGGATTTTCAGGTCCTCCTGGACTTCCAGGCCTCCCGGGCCATACTGGGCCATATGGACCCCCAGGATTACCAGGATGCAATGGTTCTAAGGGTGAACAAGGATTTCCAGGACTTCCAGGGACCCCAGGATACCCAGGGATCACAGGTGCTACTGGTTTGAAAGGACAAAAGGGTACTCCTACTGAAGGAGAAGATTTAGAACTCAATGGAAAAGGTGACCCGGGATTGCCGGGAATCCCAGGATTCCAGGGTTTGCCGGGCCCGCCAGGTTTTCCAGGGCCTGCTGGCCCACCTGGACCTCCGGGACTCTTCGGTTTTCCAGGAGCTAGGGGACTTGCGGGACCTAAGGGTCACATGGGTGATAATGTAATAGGACAGAAAGGACAACAGGGTGTGAAAGGATTAGCAGGACCCCCGGGACCACCAGGAACAGTTATTGTGACACTAACTGGCCCAGATAACAAAACGGAACTCAAGGGGGAGAAGGGAGAAAAGGGAGCCATGGGCGAACCAGGACCTCCTGGACCCCCGGGACTGCCAGGCGAGTCGTGTGGATCTGAGAAGGGTGCTCCTGGAGAACGTGGCGCACAGGGAAAACCTGGAAAAGATGGTGCCCCTGGCTTCCCTGGCACTGAGGGACCCAAGGGCAACAGGGGCTTCCCTGGATTAAAGGGTGAAGATGGTATTAAGGGATGGAAAGGGGACATTGGCCCTCCAGGATTTCGTGGTCCAACAGAATATTATGATGCATACCAGGAAAAGGGAGATGAAGGAATTCCAGGCCCACCAGGGCCCAAAGGACCCCGTGGCCCACCAGGTCCTAGGGGTCCCCCTGGAGTTCCCGGAAGCCCTGGATCATCGAGGCCTGGCCTCCAAGGAGCCCCTGGATGGCCTGGCTTGAAAGGAAGCAAAGGGGAGCAAGGGACCCCAGGAGAGGACTCAGTAGGGCCTCCCGGGTCCCCAGGCTGTCCTGGTTCACCAGGCACTGCAGGGCCACCAGGACCTCCAGGATCTCCAGGTAATATCATCTTTCGCAAAGGTTTACCTGGTGACCGTGGACTGCCAGGTCCAGCAGGGTCTCCAGGAATTCCAGGAGTCGGTGGGTCCAAAGGAGAACCAGGGCTTCTGTGTGTACAATGCCCCTGTATCCCAGGGCCTCCGGGTCTCCCAGGATTTCCAGGGTTAGATGGTGTCAAAGGAATCCCAGGAGGACAAGGAACAGCTGGCATGAAAGGAACTCCAGGGTCCCCAGGAAGTGCAGGTGCCCCAGGATTTCCGGGATTCCCAGGTGCTCCTGGAGCTCCAGGATTTAAAGGACGAAAAGGTGAAACACCTCAGCCCCAGGGGCAAGTGGGTGCCCTGGGGGATCCTGGCCTCAGAGGGCCACCAGGGAGAAAGGGGCTGGATGGAATCCCTGGGACTCCAGGACGGAAAGGATTACCAGGACCTCGAGGCCAACCGGCCCTGAGTGGTGAGAAGGGAGACCAGGGTCCTCTGGGAGATCCTGGCCCCCCTGGGTCCCCAGGACCTGCAGGACCAGCTGGACCACCTGGCTATGGACCCCAGGGAGAGCAGGGTCCAAAGGGTACCCAAGGAGTCCCTGGAGCCCTGGGACCGCCTGGAAAAGCCGGTCCTAAGGGAGAACCCAGCATTTCAACACCAATCCTGGGGCCCCCAGGACCTCCAGGGCCCCCTGGCCATGCTGGCCACCAAGGTCCACCTGGTATCCCTGGATCCATGGGGAAATGTGATCCTGGCCTTCCTGGACCTAAGGGAGAACCTGGAATTCCCGGAATTGGATTTCCTGGGCCTCCTGGCCTGAAAGGAGATCAAGGTTTTCCAGGAACAAAAGGATCACCAGGTTGTCCTGGGGAGATGGGAGAGTCTGGCTTACCTGGAGAGCCAGGCTTCCTGGGAGCCAAGGGAGAACCAGGACTAGCAAGCCCTGGAGAGCCAGGAGCACCAGGTTTTCCAGGAGAAAGAGGCGATTCAGGGGAAAATGGAGAAATTGGACTCCCTGGACTTGTGGGTCTTCCTGGAATTCCAGGAAAACAAGGGCTGGTTGGATCTCGAGGAGATCCAGGGGAGCCTGGACCACCTGGAGTAAGGGGACCCCCAGGAATATGCACAGAGGGGCCCAGGGGAGCCCAAGGACTTCCAGGCTTAAATGGATTAAAAGGGGAACCAGGCAGAAGAGGAGAAACAGGGCCAAAGGGAGACCCAGGAATTCCAGGTTTGGATAGGTCAGGACTCCCTGGAGAACCTGGACCAACAGGAAGGGCAGGTCAGCGAGGTGAGATGGGGCCTCCTGGCCCAAAAGGATTACCAGGAACTCCAGGATTTTTAGGGCTACCAGGTGAACGAGGAATGGCTGGGATGATGGGCTATCCTGGAACCCCGGGCCTTGCTGGGCCTCCAGGAAACCCAGGCACACAGGGCCAGAGGGGTAGCCTTGGGATTCCAGGAATAAAGGGCGACAGAGGGCCCCCTGGAGCTAAAGGGGAGCCAGGAGATAAAGGAAACCCAGGGCCTTCTCAAATAGCCCACTTAAAGGGGGACAAAGGAGAACCCGGCCTCAAAGGACTTACAGGAAATCCAGGTGAGAAAGGAAACAGAGGCCTTCCAGGGCTACCAGGCTTAAAGGGCCTTGAAGGACCACCTGGACCACCAGGAGCACCAGGTCCTAGAGGAGACCGGGGAAGCCCAGGGAATCCCGGAGAACCAGGACCACGTGGCATACCAGGAAGCAGGGGCAACATGGGTGTGCCAGGTTCTAAAGGAAGAAGGGGAACTGTAGGACTCCCTGGTCTACCCGGAGGACCAGGCCTCTCAGGCATTCATGGCCTCCAAGGAGATAAAGGAGAACCTGGTTATTTGGAAGATACAAGGCCAGGACCTCCAGGACCAAAGGGAGATCCAGGATTGCCAGGTGAAGTGGGAAAGAAAGGAGAAAGAGGCCCACCTGGCCCACCTGGACAGCCGGGGCCTGCTGGACCTGAGGGAGTCCCTGGGAGACCCGGGAGTCCTGGCCGCCCAGGCATGCCAGGTCCTGATGGTGATTTGGGGGATAAAGGAATGAAAGGCTTTCCAGGCCCTCCAGGAATCAAAGGCCCTCCAGGCTTCCCAGGATTCCCAGGGTCTCCAGGACCAATGGGTGTAAGAGGTGACCAGGGACATGATGGGATTCCTGGCCCTCCCGGAGAAAAGGGAGAAACAGGCTTGCTGGGGGCCCATCCAGGCCCAAGAGGGAATCCTGGTGCCCCAGGTGCTAAAGGAGACAGGGGATCCCCCGGCTGGACCGGCCTCCCGGGCAGGAAGGGAACCATGGGAGATATTGGGCCTCCAGGACCCACAGGCTTAACAGGACTCCCAGGGCCACCTGGTCTGCCTGGGGTAGTCATCCTTGGCCAAAAAGGAAATCGAGGCCCACCAGGCTCAAGAGGAAATCCAGGTGAGCCAGGTCCCCCTGGACCCCCTGGGAGGCTCACAAAAGGCATAAAAGGTGACAAAGGATTTATGGGCCAGCCTGGCCCAGAAGGTCTACCTGGAACTATAGGAGACACGGGGCCACCAGGACTTCCGGGAGCACCAGGTACCCCAGGTTCTCCAGGGCTCAGAGGTGACCCCGGATTCCTCGGATTTCCAGGTGTAAAAGGACAAAAAGGTAATCCGGGATTTACAGGATCAATTGGACCTCCAGGACCAATTGGCCCAAAAGGACCACCTGGTGCACATGGAGACCCTGGCACACTTGAGGTCATCTCCCTCCCAGGAAGCCCAGGCCTACCTGGCTCACCTGGACAACCAGGGATGCAAGGAGAACCGGGGCCACTGGGACCACCAGGAAAGCCAGGACCCTGTGGGCCAAGAGGTAAACCAGGCACTGATGGAAAGCCAGGAACTCTTGGACCAGTTGGAGAAAAAGGCAACAAAGGTTCTAAAGGAGAGCAAGGGCCACCTGGATTGGATGGATCACCAGGTGTGAAGGGAAAACCTGGAGACACTGGATCACCAGCAGCTGGGACAACAATGAGAGGCTTTGTCTTCACCCGGCATAGTCAGACCACAGCAACTCCTTCATGTCCAGAAGGGACACAGGCACTCTACAGTGGGTTTTCTCTTCTTTTCGTACAAGGAAATGAACGAGCCCATGGACAAGACCTTGGAACTCTTGGCAGCTGTCTGAAGCGATTTACCACAATGCCATTCTTATTCTGTAACATTAATAATGTATGTAATTTTGCATCTCGAAATGATTATTCATACTGGCTGTCAACACCAACTCTGATGCCAATGGACATGGCTCCAATTAGTGGCAGAGCCCTGGAGCCTTATATTAGCAGATGCACTGCCTGTGAGGGTCCGGCGATGGCCATAGCCATTCACAGCCAAACCACTGCCACTCCCCCCTGTCCCCAAGGGTGGATTTCTCTCTGGAAGGGATTTTCTTTCATCATGTTCACAAGTGCAGGTTCTGAGGGTGCTGGACAAGCACTGGCCTCCCCTGGCTCCTGTTTAGAGGAATTCCGAGCCAATCCATTCATAGAATGTCACGGAAGAGGGACGTGCAACTATTATTCAAATTCCTACAGCTTCTGGTTGGCTTCATTATACCCAGAAAGAATGTTCAGAAAACCTATTCCATCAACTGTGAAAGCTGGGGAGTTAGAAAAAATAATAAGTCGCTGTCAGGTGTGCATGAAGAAAAGACACTGA

Related Sequences

XP_004868035.1 Protein

Col4a3 PREDICTED: collagen alpha-3(IV) chain isoform X1 [Heterocephalus glaber]

Length: 1670 aa      
>XP_004868035.1
MRPECASRPPARLQWLLLLLLAAAPADCKGCACTDKGQCFCSGAKGEKGEKGFPGPPGSPGQKGFPGPEGLPGPQGPKGSPGLPGFTGPKGVRGITGLPGFSGPPGLPGLPGHTGPYGPPGLPGCNGSKGEQGFPGLPGTPGYPGITGATGLKGQKGTPTEGEDLELNGKGDPGLPGIPGFQGLPGPPGFPGPAGPPGPPGLFGFPGARGLAGPKGHMGDNVIGQKGQQGVKGLAGPPGPPGTVIVTLTGPDNKTELKGEKGEKGAMGEPGPPGPPGLPGESCGSEKGAPGERGAQGKPGKDGAPGFPGTEGPKGNRGFPGLKGEDGIKGWKGDIGPPGFRGPTEYYDAYQEKGDEGIPGPPGPKGPRGPPGPRGPPGVPGSPGSSRPGLQGAPGWPGLKGSKGEQGTPGEDSVGPPGSPGCPGSPGTAGPPGPPGSPGNIIFRKGLPGDRGLPGPAGSPGIPGVGGSKGEPGLLCVQCPCIPGPPGLPGFPGLDGVKGIPGGQGTAGMKGTPGSPGSAGAPGFPGFPGAPGAPGFKGRKGETPQPQGQVGALGDPGLRGPPGRKGLDGIPGTPGRKGLPGPRGQPALSGEKGDQGPLGDPGPPGSPGPAGPAGPPGYGPQGEQGPKGTQGVPGALGPPGKAGPKGEPSISTPILGPPGPPGPPGHAGHQGPPGIPGSMGKCDPGLPGPKGEPGIPGIGFPGPPGLKGDQGFPGTKGSPGCPGEMGESGLPGEPGFLGAKGEPGLASPGEPGAPGFPGERGDSGENGEIGLPGLVGLPGIPGKQGLVGSRGDPGEPGPPGVRGPPGICTEGPRGAQGLPGLNGLKGEPGRRGETGPKGDPGIPGLDRSGLPGEPGPTGRAGQRGEMGPPGPKGLPGTPGFLGLPGERGMAGMMGYPGTPGLAGPPGNPGTQGQRGSLGIPGIKGDRGPPGAKGEPGDKGNPGPSQIAHLKGDKGEPGLKGLTGNPGEKGNRGLPGLPGLKGLEGPPGPPGAPGPRGDRGSPGNPGEPGPRGIPGSRGNMGVPGSKGRRGTVGLPGLPGGPGLSGIHGLQGDKGEPGYLEDTRPGPPGPKGDPGLPGEVGKKGERGPPGPPGQPGPAGPEGVPGRPGSPGRPGMPGPDGDLGDKGMKGFPGPPGIKGPPGFPGFPGSPGPMGVRGDQGHDGIPGPPGEKGETGLLGAHPGPRGNPGAPGAKGDRGSPGWTGLPGRKGTMGDIGPPGPTGLTGLPGPPGLPGVVILGQKGNRGPPGSRGNPGEPGPPGPPGRLTKGIKGDKGFMGQPGPEGLPGTIGDTGPPGLPGAPGTPGSPGLRGDPGFLGFPGVKGQKGNPGFTGSIGPPGPIGPKGPPGAHGDPGTLEVISLPGSPGLPGSPGQPGMQGEPGPLGPPGKPGPCGPRGKPGTDGKPGTLGPVGEKGNKGSKGEQGPPGLDGSPGVKGKPGDTGSPAAGTTMRGFVFTRHSQTTATPSCPEGTQALYSGFSLLFVQGNERAHGQDLGTLGSCLKRFTTMPFLFCNINNVCNFASRNDYSYWLSTPTLMPMDMAPISGRALEPYISRCTACEGPAMAIAIHSQTTATPPCPQGWISLWKGFSFIMFTSAGSEGAGQALASPGSCLEEFRANPFIECHGRGTCNYYSNSYSFWLASLYPERMFRKPIPSTVKAGELEKIISRCQVCMKKRH