Sequence details NCBI ID: XM_004867883.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Trpc4ap
Gene Name transient receptor potential cation channel, subfamily C, member 4 associated protein, transcript variant X1
Entrez Gene ID 101701482

Database interlinks

Part of NW_004624842.1 (Scaffold)

For more information consult the page for NW_004624842.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TRPC4AP ENSCPOG00000003448 (Guinea pig)

Gene Details

transient receptor potential cation channel, subfamily C, member 4 associated protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003114, Guinea pig)

Protein Percentage 98.61%
CDS Percentage 95.73%
Ka/Ks Ratio 0.04843 (Ka = 0.0073, Ks = 0.1502)

TRPC4AP ENSG00000100991 (Human)

Gene Details

transient receptor potential cation channel, subfamily C, member 4 associated protein

External Links

Gene Match (Ensembl Protein ID: ENSP00000252015, Human)

Protein Percentage 97.87%
CDS Percentage 93.1%
Ka/Ks Ratio 0.03623 (Ka = 0.0101, Ks = 0.2795)

Trpc4ap ENSMUSG00000038324 (Mouse)

Gene Details

transient receptor potential cation channel, subfamily C, member 4 associated protein

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000037574, Mouse)

Protein Percentage 97.24%
CDS Percentage 90.8%
Ka/Ks Ratio 0.03161 (Ka = 0.0131, Ks = 0.4136)

Trpc4ap ENSRNOG00000019152 (Rat)

Gene Details

transient receptor potential cation channel, subfamily C, member 4 associated protein (Trpc4ap), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000026091, Rat)

Protein Percentage 97.49%
CDS Percentage 90.63%
Ka/Ks Ratio 0.02657 (Ka = 0.0117, Ks = 0.441)

Genome Location

Sequence Coding sequence

Length: 2403 bp    Location: 4317753..4395792   Strand: +
Raw sequence   
>XM_004867883.1
ATGGCGGCGGCGCCAGCGGCTGCTGGGGCTGGGGTCTGCCGAGGGAGACGATCGGCAGCAACAGTGGTAGCATGGGGCGGATGGGGCGGCCGGCCGCGGCCGGAGAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGACGGGCCGGGCCCTGATCCGGGCAGTGCAGTTCACTGAAGCTTTTTTGACAGAAAGGGACAAACAGTCCAAATGGAGTGGAATTCCGCAGTTGCTCCTTAAGTTATATGCCACCAGCCACCTCCACAGTGACTTCATTGAGTGCCAAAACATCCTCAAGGAAATTTCTCCTCTTCTCTCCATGGAGGCTATGGCATTTGTTACTGAAGATAGGAAACTTACTCAAGAAACTACTTATCCAAATACATATATTTTTGATTTGTTTGGAGGTGTTGATCTCCTTGTAGAAATTCTTATGAGGCCTACAATCTCTATCCGGGGACAGAAACTAAAAATAAGCGACGAAATGTCCAAGGACTGCTTGAGCATCCTATATAACACCTGTGTCTGTACAGAAGGAGTTACAAAGCGTTTGGCCGAAAAGAATGATTTTGTGATCTTCCTGTTTACACTGATGACGAGTAAGAAGACATTCTTACAAACAGCAACCCTCATTGAAGATATTTTGGGTGTTAAAAAGGAAATGATCCGACTAGATGAAGTTCCCAATCTGAGTTCCTTAGTATCCAATTTTGACCAGCAACAGCTTGCTAATTTCTGCCGGATTCTGGCTGTCACCATTTCAGAGATGGATACAGGGAATGATGACAAGCACACACTTCTTGCCAAAAATGCTCAGCAGAAGAAGAGCTTGAGCTTGGGGCCTTCTGCAGCTGAAATCAACCAAGCGGCCCTTCTCAGCATCCCTGGCTTTGTTGAACGACTTTGCAAACTGGCGACTCGGAAGGTGTCAGAGTCAACGGGCACAGCCAGCTTCCTTCAGGAGTTGGAGGAGTGGTACACGTGGTTAGACAATGCTTTGGTTTTAGATGCCCTGATGCGAGTGGCAAATGAGGAGTCTGAGCACAATCAAGGTACTTTAGCCTCCACTGTGTTCCCTCCTCCAGGCGCTTCCGAGGAGAGTGGATTGCCTCACACTTCTGCCAGGACCCAGCTGCCCCAGTCCATGAAGATTATGCACGAGATCATGTACAAACTGGAAGTGCTGTATGTCCTCTGTGTGCTGCTGATGGGGCGGCAGCGAAACCAGGTTCACAGAATGATTGCAGAGTTTAAGCTGATCCCTGGACTCAATAATTTGTTTGACAAGCTGATTTGGAGAAAACATTCAGCATCTGCCCTCGTCCTCCATGGTCACAACCAAAACTGTGACTGTAGCCCGGACATCACCTTGAAGATCCAGTTTCTGAGGCTTCTTCAGAGTTTCAGTGACCACCACGAGAACAAGTACCTGCTGCTCAACAACCAGGAGCTGAATGAACTCAGTGCCATCTCCCTCAAGGCCAACATCCCTGAAGTAGAAGCCGTCCTCAACACTGACAGGAGTTTGGTGTGTGATGGGAAGAGGGGCTTGTTAACTCGTCTGCTACAGGTCATGAAGAAGGAGCCAGCCGAGTCATCTTTCAGGTTTTGGCAAGCCCGGGCTGTGGAGAGTTTCCTCCGAGGGACCACCTCCTATGCAGACCAGATGTTCCTGCTGAAGCGAGGCCTTCTGGAGCACATCCTGTACTGCATTGTGGACAGTGAGTGCAAGTCGAGGGATGTGCTGCAGAGCTACTTTGACCTTCTGGGAGAGCTGATGAAGTTCAACGTTGATGCATTCAAGAGATTCAATAAATACATCAACACTGATGCAAAGTTCCAGGTGTTCCTGAAGCAGATCAACAGCTCCCTTGTGGACTCCAACATGCTGGTGCGTTGCGTCACTTTGTCACTGGACCGATTTGAAAACCAGGTGGACATGAAAGTGGCTGAGGTCCTGTCTGAGTGCCGCCTGCTCGCCTACATATCCCAGGTGCCCACACAGATGTCCTTCCTCTTCCGCCTCATCAATATCATCCACGTGCAGACACTGACCCAGGAGAACGTCAGCTGCCTCAACACTAGCTTGGTGATCCTTATGCTGGCCCGACGGAAAGAGAGGCTGCCCTTGTATCTGCGCCTGCTGCAGCGGATGGAACACAGCAAAAAGTATCCTGGCTTCCTGCTCAATAACTTCCACAACCTACTGCGCTTCTGGCAGCAGCATTACCTGCACAAAGACAAGGATAGCACCTGCCTGGAGAACAGCTCCTGTATCAGCTTCTCATACTGGAAGGAGACAGTGTCCATCCTGTTGAACCCAGACCGCCAGTCACCTTCTGCCCTTGTCAGCTACATTGACGAGCCCTACATGGACATAGACAAGGACTTCACTGAGGAGTGA

Related Sequences

XP_004867940.1 Protein

Trpc4ap PREDICTED: short transient receptor potential channel 4-associated protein isoform X1 [Heterocephalus glaber]

Length: 800 aa      View alignments
>XP_004867940.1
MAAAPAAAGAGVCRGRRSAATVVAWGGWGGRPRPENILLQLRQGQLTGRALIRAVQFTEAFLTERDKQSKWSGIPQLLLKLYATSHLHSDFIECQNILKEISPLLSMEAMAFVTEDRKLTQETTYPNTYIFDLFGGVDLLVEILMRPTISIRGQKLKISDEMSKDCLSILYNTCVCTEGVTKRLAEKNDFVIFLFTLMTSKKTFLQTATLIEDILGVKKEMIRLDEVPNLSSLVSNFDQQQLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVERLCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVANEESEHNQGTLASTVFPPPGASEESGLPHTSARTQLPQSMKIMHEIMYKLEVLYVLCVLLMGRQRNQVHRMIAEFKLIPGLNNLFDKLIWRKHSASALVLHGHNQNCDCSPDITLKIQFLRLLQSFSDHHENKYLLLNNQELNELSAISLKANIPEVEAVLNTDRSLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVESFLRGTTSYADQMFLLKRGLLEHILYCIVDSECKSRDVLQSYFDLLGELMKFNVDAFKRFNKYINTDAKFQVFLKQINSSLVDSNMLVRCVTLSLDRFENQVDMKVAEVLSECRLLAYISQVPTQMSFLFRLINIIHVQTLTQENVSCLNTSLVILMLARRKERLPLYLRLLQRMEHSKKYPGFLLNNFHNLLRFWQQHYLHKDKDSTCLENSSCISFSYWKETVSILLNPDRQSPSALVSYIDEPYMDIDKDFTEE