Sequence details NCBI ID: XM_004867736.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cdhr1
Gene Name cadherin-related family member 1, transcript variant X2
Entrez Gene ID 101706617

Database interlinks

Part of NW_004624841.1 (Scaffold)

For more information consult the page for NW_004624841.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CDHR1 ENSCPOG00000005235 (Guinea pig)

Gene Details

cadherin-related family member 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004705, Guinea pig)

Protein Percentage 88.45%
CDS Percentage 88.81%
Ka/Ks Ratio 0.12311 (Ka = 0.0578, Ks = 0.4694)

CDHR1 ENSG00000148600 (Human)

Gene Details

cadherin-related family member 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000361189, Human)

Protein Percentage 84.62%
CDS Percentage 86.56%
Ka/Ks Ratio 0.18207 (Ka = 0.0836, Ks = 0.459)

Cdhr1 ENSMUSG00000021803 (Mouse)

Gene Details

cadherin-related family member 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000022337, Mouse)

Protein Percentage 84.17%
CDS Percentage 84.36%
Ka/Ks Ratio 0.15051 (Ka = 0.0882, Ks = 0.586)

Cdhr1 ENSRNOG00000013330 (Rat)

Gene Details

cadherin-related family member 1 (Cdhr1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000018631, Rat)

Protein Percentage 84.17%
CDS Percentage 83.9%
Ka/Ks Ratio 0.14479 (Ka = 0.0895, Ks = 0.6182)

Genome Location

Sequence Coding sequence

Length: 2580 bp    Location: 2838995..2819692   Strand: -
Raw sequence   
>XM_004867736.1
ATGGGGCGCGCCCCGTGGGCCGCCGCGGTCCTGGGGCTGCTGCGCTTCTGCTTGGCCCAGGCCAACTTCGCCCCTCATTTTTTCGACAACGGAGCGGGCAGCAGCAACGGAAACATGGCCTTGTTCAGCCTCCCAGAGGACACCCCCGTAGGCTCTCATGTGTACACCCTCAACGGGACAGACCCCGAGGGAGACCCTGTCTCCTACCACATCAGCTTTGACCCCAGTGCTAGAAACGTCTTTTCCATTGACCAGAATTTTGGAAACATCACCCTGGTTGAGGAGCTGGACAGAGAGAAGGAGGATGAGATCGAAGCCATCATCAGCATTTCCGATGGCCTGAACCTGGTAGCAGAAAAGGTCACTATCCTGGTGACTGATGCTAATGATGAGGCGCCCAGGTTCACCCAGGAGCCTTACGTCGTCCTGGTGCCAGAGGACACACCTGCTGGAAGTAGCCTCTTTGCAGTCCATGCTGTGGACAGGGACACAGGCTCTGGAGGGAGTGTCACCTACTTCCTGCAGAGCCTCCACCTCACCAAATTTGCCATGGACCGCCACAGTGGTGTGCTGCGCCTCCAGGCCGGGGGCACTCTGGACTACGAGAAGTGCCGGACCCACTTGGTCACCGTGGTTGCCAAGGATGGAGGGGGCAGGCTACGAGGGGCCCACGTGGTGTTCTCAGCCACCACCACAGTCACAGTCAATGTGGAGGATGTTCAGGACATGGCTCCTGTCTTCGTGGGCACACCCTACTATGGCTACGTGTACGAGGACACCCTTCCGGGCTCAGAGGTGTTGACGGTGGTCGCTGTGGATGGAGACCAGGGCAGGCCCAACCACCTTGTCTACAGCCTCATGAACGGGAGCAGTGGAGCCTTTGAAATTAATGAGACATCCGGAGCCATCTCAGTCTTGCAGAACCCTTCCCAGCTGCGCAGAGAGGTGTATGAGCTGCACGTACAGGTGACAGAGGTCAGCTCTGTGGGGAGCCCAGCTGCCCAGGCCGTGGTCCCTGTCACCATCAGGATCGTGGACCTCAACAACCACCCGCCGACGTTCTACGGAGAGAGCGGGCCCCAGAACAGGTTTGAGCTGTCCATGTATGAGCACCCACCCCAGGGCGAGATCCTGCGAGGCCTCAAGATCACTGTCAACGACTCCGACCAGGGAGCCAATGCCAAATTCAACTTGCGACTTGTGGGACCTGGAGGCATCTTCCGAGTGGTCCCACAAACTGTACTCAATGAAGCCCAGGTCACCATCATTGTGGAGAACTCAGCTGCCATTGACTTTGAGAAGTCCAGAGTGCTGACCTTCAAGCTCCTGGCCGTTGAAATGAACACCCCGGAGAAGTTCAGTTCCACGGCAGATATTGTGATCCAGCTCCTGGACACCAATGACAATGTCCCCAAGTTCACCTCCCACTACTATATTGCCAGGATCCCTGAGAATGCCCCAGGCAGCTCCAACGTGGTGGCTGTCACGGCTGTGGATCCAGACACGGGATCCTGGGGCCAAGTCAAATACTCCATCTATGGGACCGGGGCAGATCTGTTCCTGATCCACTCCTCCACTGGGCTTATCTACACCCAGCCCTGGGCCATCCTGGATGCTGAGGCCACAGCAAGGTACAACTTTTATGTGAAGGCAGAGGACATGGAAGGCAGGTACAGCCTGGCTGAGGTCTTTGTCACTCTGCTAGACATCAATGACCACTACCCCCAGTTTGGAAAGAGCATCCAGGAGAAGACAATGGTGCTGGGGACCCCAGTGAAAATTGAGGCCACAGACCAGGACGCAGAGGAGCCCAACAACCTGGTGGACTATTCCATCACCCATGCGGAGCCGGCCAATGTGTTTGACATCGATGCACACACAGGGGAGATCCGGCTCAAGAACTCCATCCGCTCCCTGGATGCCCTGCACAACATCACACCCATCGGGGACTATAGGTGGTCCCTAGAGGTGCAGGCCAAGGACCGAGGCTCCCCATCCTTCAGCACCACGGCCTTACTCAAGATTGATATCACAGATGCTGAGACGCTGTCCCGAGACCCTGTGACTGCCTTCCTGCTGCAGACCAAGGACAACCCCATGAAGGCCATGGGTGTGCTGGCCGGCATCATGGCCATTGTTGTGGCCATCACCGTCCTCATCTCCACTGCCACCTTCTGGCGCAACAAGAAGTCCAACAAGGTCCTGCCCGTTCGCCGCGTGCTCCGAAGGCGGTCCAGCCCTGCACCCCGCAGCATCCGCATCCAGTGGCTCAAGTTCAGGAGGACCAAGACCGCCACCAAGTTCATGCTCAAGGAGAAGCCCCCCAACGAGAACTGCAACAACAGCAGCACAGGAGCCCCACTTCCCCCCAAAGCTCCATCTCTCCCTCCACTCGCCAGAATGGCACCCAACACAGTCGCACACTGGATGGTGCCTACTGTCTCTGGATCCCTCGCCCCCCAGAAACCCCAACAGTCACCCAAGGCCCTGGCCTTGGGCAGCCCTGTCAGGTCATCTGTGGTCTCTGAGCTCAAGCAGAAGTTTGAGAAGAAGAGTGCAGACAAGAAGGCTTACTTCTAG

Related Sequences

XP_004867793.1 Protein

Cdhr1 PREDICTED: cadherin-related family member 1 isoform X2 [Heterocephalus glaber]

Length: 859 aa      View alignments
>XP_004867793.1
MGRAPWAAAVLGLLRFCLAQANFAPHFFDNGAGSSNGNMALFSLPEDTPVGSHVYTLNGTDPEGDPVSYHISFDPSARNVFSIDQNFGNITLVEELDREKEDEIEAIISISDGLNLVAEKVTILVTDANDEAPRFTQEPYVVLVPEDTPAGSSLFAVHAVDRDTGSGGSVTYFLQSLHLTKFAMDRHSGVLRLQAGGTLDYEKCRTHLVTVVAKDGGGRLRGAHVVFSATTTVTVNVEDVQDMAPVFVGTPYYGYVYEDTLPGSEVLTVVAVDGDQGRPNHLVYSLMNGSSGAFEINETSGAISVLQNPSQLRREVYELHVQVTEVSSVGSPAAQAVVPVTIRIVDLNNHPPTFYGESGPQNRFELSMYEHPPQGEILRGLKITVNDSDQGANAKFNLRLVGPGGIFRVVPQTVLNEAQVTIIVENSAAIDFEKSRVLTFKLLAVEMNTPEKFSSTADIVIQLLDTNDNVPKFTSHYYIARIPENAPGSSNVVAVTAVDPDTGSWGQVKYSIYGTGADLFLIHSSTGLIYTQPWAILDAEATARYNFYVKAEDMEGRYSLAEVFVTLLDINDHYPQFGKSIQEKTMVLGTPVKIEATDQDAEEPNNLVDYSITHAEPANVFDIDAHTGEIRLKNSIRSLDALHNITPIGDYRWSLEVQAKDRGSPSFSTTALLKIDITDAETLSRDPVTAFLLQTKDNPMKAMGVLAGIMAIVVAITVLISTATFWRNKKSNKVLPVRRVLRRRSSPAPRSIRIQWLKFRRTKTATKFMLKEKPPNENCNNSSTGAPLPPKAPSLPPLARMAPNTVAHWMVPTVSGSLAPQKPQQSPKALALGSPVRSSVVSELKQKFEKKSADKKAYF