Details from NCBI annotation

Gene Symbol Msr1
Gene Name macrophage scavenger receptor 1, transcript variant X1
Entrez Gene ID 101712145

Database interlinks

Part of NW_004624839.1 (Scaffold)

For more information consult the page for NW_004624839.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

MSR1 ENSCPOG00000022785 (Guinea pig)

Gene Details

macrophage scavenger receptor 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018395, Guinea pig)

Protein Percentage 78.67%
CDS Percentage 85.33%
Ka/Ks Ratio 0.45591 (Ka = 0.1326, Ks = 0.2909)

MSR1 ENSG00000038945 (Human)

Gene Details

macrophage scavenger receptor 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000262101, Human)

Protein Percentage 75.89%
CDS Percentage 82.74%
Ka/Ks Ratio 0.30382 (Ka = 0.1381, Ks = 0.4544)

Msr1 ENSMUSG00000025044 (Mouse)

Gene Details

macrophage scavenger receptor 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000026021, Mouse)

Protein Percentage 67.56%
CDS Percentage 75.56%
Ka/Ks Ratio 0.34057 (Ka = 0.2228, Ks = 0.6541)

Msr1 ENSRNOG00000012779 (Rat)

Gene Details

macrophage scavenger receptor 1 (Msr1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000017339, Rat)

Protein Percentage 67.11%
CDS Percentage 74.96%
Ka/Ks Ratio 0.33962 (Ka = 0.2297, Ks = 0.6764)

Genome Location

Sequence Coding sequence

Length: 1356 bp    Location: 694154..768886   Strand: +
>XM_004867636.1
ATGGAGAGGCAGAATATCTTTCTTGATCATCAAGAGGACCCTGATAGCTATTCAGATTGTGTGAAATTTGATGCTCGATCAATGACGGCATTGCTTCCTCCTTATCCTAAAAATGGCCTCCAAGAGAAACTGAAGTCCTTCAAAGCTGCACTCATTGCCCTGTATCTCCTTGTGTTTGTTGTTCTGATACCTGTCATCGGAATAGTGGCAGCTCATCTTCTGAAGTGGGAAATGAAGAATTGCACAGTTGGTTCAATTCATGCAAGCGATATGTCTCAAAGTCTGGGAAGACAAAATGTCAGTGGAGATGAAATGAGATTTCGAGAAATTATCTTGGAACACATTGACAACATTGAGAAGAGAATCCAACACATTTCAGATTTAGAAGCCAATTTCATAGATTCAGACTACTTCCAAAATTTCAGTGCAACAACTGATCAAAGATTTAATGATACTCTTCTGCAGCTAAGTACCTTGGTTTCCTCAGTCCAAGAACATGGCAATGCAGTAGATGAAATCTCCAAGTCCTTAATAAGTCTGAACATCACATCGCTTGATTTGCAGCTCAATATAGAAACAATGAGTAGCAAAATCCAAGAGACTACATTGAAGCAAAAAGAGGATATTAGTAAATTAAAGGAGAGTGTATACAATACATCAACAGAAATTAAGTCTCTGAAAGAAGAGCAAGAGCATCTGGAACAGGAAATAAAGAGAGAAGTGAAAGCACTGAATAACATCACCAATGACCTCAGACTCAAAGATTGGGAACATTCTCTAACTTTGAGAAATATCACTTTGATTCAAGGTCCCCCTGGACCCCGAGGTGAAAAAGGAGACAGAGGTCCTGCAGGAGAAATCGGTTTACCAGGCATCCCAGGCCCTATAGGTCCTCCAGGTCTTAAAGGTGATCGTGGAGTAGTTGGATTTCCTGGAAGTAGAGGAATCCCTGGACTAATAGGAAAGGCGGGAAGAACAGGAAATCCTGGACAAAAAGGCCAAAAGGGAGAAAGAGGAAGTGGGAACACATTCACTCTGACTAAGACCGTTCGCCTGGCTGATGGCAGCGGGCCTCACGAGGGTAGAGTGGAGGTCTTCCACGAGGGCCAGTGGGGCACCATTTGTGACGATCGCTGGGAAATACGAGGTGCATCTGTTGTCTGTCGAAGTTTGGGGTACAAAGGCGTTCGAAACGTGCACAAAGCAGCTTATTTTGGACAAGGTACTGGTCCAATATGGCTGAATGAAGTATATTGTTTTGGGAGAGAGTCATCTATTGAAGAATGTAATATCAAGCAATGGGGTGTGAGAGTCTGTACACACTCTGAAGATGCTGGAGTCACATGCACTATATAA

Related Sequences

XP_004867693.1 Protein

Msr1 PREDICTED: macrophage scavenger receptor types I and II-like isoform X1 [Heterocephalus glaber]

Length: 451 aa      View alignments
>XP_004867693.1
MERQNIFLDHQEDPDSYSDCVKFDARSMTALLPPYPKNGLQEKLKSFKAALIALYLLVFVVLIPVIGIVAAHLLKWEMKNCTVGSIHASDMSQSLGRQNVSGDEMRFREIILEHIDNIEKRIQHISDLEANFIDSDYFQNFSATTDQRFNDTLLQLSTLVSSVQEHGNAVDEISKSLISLNITSLDLQLNIETMSSKIQETTLKQKEDISKLKESVYNTSTEIKSLKEEQEHLEQEIKREVKALNNITNDLRLKDWEHSLTLRNITLIQGPPGPRGEKGDRGPAGEIGLPGIPGPIGPPGLKGDRGVVGFPGSRGIPGLIGKAGRTGNPGQKGQKGERGSGNTFTLTKTVRLADGSGPHEGRVEVFHEGQWGTICDDRWEIRGASVVCRSLGYKGVRNVHKAAYFGQGTGPIWLNEVYCFGRESSIEECNIKQWGVRVCTHSEDAGVTCTI