Sequence details NCBI ID: XM_004867578.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Npas3
Gene Name neuronal PAS domain protein 3, transcript variant X1
Entrez Gene ID 101719130

Database interlinks

Part of NW_004624838.1 (Scaffold)

For more information consult the page for NW_004624838.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

NPAS3 ENSCPOG00000006976 (Guinea pig)

Gene Details

neuronal PAS domain protein 3

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006291, Guinea pig)

Protein Percentage 98.81%
CDS Percentage 96.33%
Ka/Ks Ratio 0.03113 (Ka = 0.0055, Ks = 0.1776)

NPAS3 ENSG00000151322 (Human)

Gene Details

neuronal PAS domain protein 3

External Links

Gene Match (Ensembl Protein ID: ENSP00000348460, Human)

Protein Percentage 97.06%
CDS Percentage 93.4%
Ka/Ks Ratio 0.05707 (Ka = 0.0171, Ks = 0.2998)

Npas3 ENSMUSG00000021010 (Mouse)

Gene Details

neuronal PAS domain protein 3

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000098975, Mouse)

Protein Percentage 97.28%
CDS Percentage 91.45%
Ka/Ks Ratio 0.03193 (Ka = 0.0143, Ks = 0.4468)

Npas3 ENSRNOG00000032407 (Rat)

Gene Details

Protein Npas3

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000045768, Rat)

Protein Percentage 95.92%
CDS Percentage 90.39%
Ka/Ks Ratio 0.04326 (Ka = 0.0222, Ks = 0.513)

Genome Location

Sequence Coding sequence

Length: 2781 bp    Location: 3904799..3006060   Strand: -
Raw sequence   
>XM_004867578.1
ATGGGGAGGGCCGGCGCCGCGGCCAACGGCACCCCGCAGAACGTCCAGGGCATCACCTCCTACCAGCAGCGAATAACTGCCCAGCATCCTCTGCCCAACCAATCAGAATGTAGGAAAATCTACAGATATGACGGAATCTACTGTGAATCTACCTACCAGAATTTACAAGCATTGAGAAAGGAGAAGTCTCGAGATGCTGCTCGTTCCCGCAGGGGAAAAGAAAATTTTGAGTTCTATGAATTGGCCAAGTTGTTGCCTCTTCCTGCAGCCATCACCAGCCAGCTTGACAAGGCATCTATCATTCGACTTACAATTAGCTATCTGAAAATGCGGGACTTTGCTAATCAGGGGGACCCTCCATGGAACTTGCGAATGGAAGGCCCTCCGCCCAACACATCAGTAAAAGGTGCACAACGAAGGAGAAGCCCCAGTGCATTAGCCATTGAAGTATTTGAAGCACATTTGGGAAGTCACATTTTGCAGTCCCTGGATGGCTTTGTTTTTGCACTAAATCAAGAAGGAAAATTTTTGTACATTTCTGAAACGGTCTCCATCTACCTAGGCCTCTCACAAGTAGAGCTGACAGGAAGCAGCGTCTTTGACTATGTACACCCTGGGGACCACGTGGAGATGGCAGAGCAGCTGGGCATGAAGCTCCCGCCTGGGCGGGGTCTCCTCTCACAGGGCACTGCAGAGGATGGAGCCAGCTCAGCATCTTCTTCTTCTCAGTCAGAGACCCCTGAGCCAGTGGAGTCAACCAGCCCCAGTCTGCTAACCACTGACAACACTCTTGAGCGTTCCTTTTTCATCCGAATGAAATCTACTCTGACCAAACGAGGCGTGCACATCAAATCATCAGGATATAAGGTGATTCACATAACTGGCCGGCTACGCCTGAGAGTATCACTGTCCCACGGGAGGACCGTGCCCAGCCAAATCATGGGTCTTGTGGTGGTGGCTCATGCCTTACCTCCTCCTACGATCAATGAAGTCAGAATTGACTGCCATATGTTCGTCACTCGAGTAAATATGGACCTCAATATCATTTACTGTGAAAATAGAATTAGTGATTACATGGATTTGACACCTGTAGACATCGTAGGGAAAAGATGCTACCACTTCATCCACGCTGAAGACGTAGAGGGCATCAGGCACAGTCACCTGGACTTGCTGAATAAGGGTCAATGCGTGACGAAGTACTATCGCTGGATGCAGAAGAACGGAGGCTACATTTGGATACAGTCTAGTGCCACCATAGCTATTAATGCCAAGAATGCCAATGAAAAGAACATCATCTGGGTGAATTATCTTCTTAGCAATCCTGAGTACAAGGACACACCCATGGACATCGCACAGCTGCCCCACCTGCCAGAGAAAACTTCCGAATCCTCTGAGACATCCGACTCTGAGTCAGACTCTAAAGACACCTCAGGTATTACAGAGGACAACGAGAACTCTAAGTCTGACGAGAAGGGGAATCAGTCCGAGAACAGCGAAGACCCGGAGCCCGACCGGAAGAAGTCTGGCAGTGCGTGCAACAACGACATGAACTGCAACGACGACGGCCACAGCTCCAGCAACCCGGACAGCCGCGACAGTGACGACAGCTTCGAGCACTCGGACTTTGAGAACCCCAAGGCGGCGGAGGACGGCTTCAGCGCGCTGGGCCCGATGCAGATCAAGGTGGAGCGCTACGTGGAGAGCGAGTCGGACCTGCGGCTGCAGAACTGCGAGTCGCTTACATCCGACAGCGCCAAGGACTCGGACAGCGCGGGCGAGGCGGGCGCGCAGGCCTCCAGCAAACACCAGAAGCGCAAGAAGAGGCGGAAACGGCAGAAGGGCGGCAGCGCCAGCCGCCGGCGCCTATCCAGCGCGTCGAGCCCCGGTGGCCTGGACGCTGGCCTGGTGGAGCCCCCGCGGCTGCTGTCCTCCCCCCACAGTGCCTCGGTGCTCAAGATTAAGACGGAGATCTCGGAACCCATCAACTTCGACAACGACAGCAGCATCTGGAACTACCCGCCCAACCGGGAGATCTCCAGGAACGAGTCCCCCTACAGCATGACCAAGCCCCCCAGCTCCGAGCACTTCCCGTCCCCACAGGGCGGCACTGGCGGCGGGGGGCTGCACGTGGCCATCCCGGACTCGGTCCTCACCCCGCCCGGCGCCGACGGCGCGGCTGCCCGCAAGACCCAGTTCAGCTCCTCGGCCACCTCAGCCTTGGCCCCCGTGGCGTCCGACCCCCTGTCACCCCCGCTCTCTGCGTCCCCACGGGACAAGCACCCCGGGGGCGGCGGGGGCAGCGGCAGTGGCCCCAGCGCGTCCAACTCCTTGTTGTACACTGGGGACCTGGAGGCGCTGCAGAGGTTGCAGGCGGGCAACGTCGTCCTCCCTCTGGTGCACCGGGTGACCGGCACCCTGGCCGCCACCAGCACGGCCGCGCAGAGGGTCTACACCACGGGCACCATCCGCTACGCGCCAGCCGAGGTGACCCTGGCCATGCAGGGCAACCTGCTGCCCAATGCGCACGCTGTTAACTTCGTGGACGTTAACAGCCCCGGCTTCGGCCTCGACCCCAAGACGCCCATGGAGATGCTCTACCACCACGTGCACAGGCTCAACATGTCGGGACCGTTCGGCGGCGCCGTGAGCGCGGCCAGCCTGACACAGATGCCCGCGGGCAACGTGTTCACCACGGCGGAGGGACTCTTCTCCACGCTGCCCTTCCCAGTCTATAGCAACGGCATCCACGCAGCACAGACTCTGGAGCGCAAGGAGGACTGA

Related Sequences

XP_004867635.1 Protein

Npas3 PREDICTED: neuronal PAS domain-containing protein 3 isoform X1 [Heterocephalus glaber]

Length: 926 aa      View alignments
>XP_004867635.1
MGRAGAAANGTPQNVQGITSYQQRITAQHPLPNQSECRKIYRYDGIYCESTYQNLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPNTSVKGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTAEDGASSASSSSQSETPEPVESTSPSLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMDIAQLPHLPEKTSESSETSDSESDSKDTSGITEDNENSKSDEKGNQSENSEDPEPDRKKSGSACNNDMNCNDDGHSSSNPDSRDSDDSFEHSDFENPKAAEDGFSALGPMQIKVERYVESESDLRLQNCESLTSDSAKDSDSAGEAGAQASSKHQKRKKRRKRQKGGSASRRRLSSASSPGGLDAGLVEPPRLLSSPHSASVLKIKTEISEPINFDNDSSIWNYPPNREISRNESPYSMTKPPSSEHFPSPQGGTGGGGLHVAIPDSVLTPPGADGAAARKTQFSSSATSALAPVASDPLSPPLSASPRDKHPGGGGGSGSGPSASNSLLYTGDLEALQRLQAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAMQGNLLPNAHAVNFVDVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGGAVSAASLTQMPAGNVFTTAEGLFSTLPFPVYSNGIHAAQTLERKED