Sequence details NCBI ID: XM_004867557.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Psma6
Gene Name proteasome (prosome, macropain) subunit, alpha type, 6
Entrez Gene ID 101709607

Database interlinks

Part of NW_004624838.1 (Scaffold)

For more information consult the page for NW_004624838.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PSMA6 ENSCPOG00000003107 (Guinea pig)

Gene Details

proteasome (prosome, macropain) subunit, alpha type, 6

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002813, Guinea pig)

Protein Percentage 99.59%
CDS Percentage 95.66%
Ka/Ks Ratio 0.01105 (Ka = 0.0019, Ks = 0.1749)

PSMA6 ENSG00000100902 (Human)

Gene Details

proteasome (prosome, macropain) subunit, alpha type, 6

External Links

Gene Match (Ensembl Protein ID: ENSP00000261479, Human)

Protein Percentage 100.0%
CDS Percentage 95.26%
Ka/Ks Ratio 0.001 (Ka = 0.0002, Ks = 0.2173)

Psma6 ENSMUSG00000021024 (Mouse)

Gene Details

proteasome (prosome, macropain) subunit, alpha type 6

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000021412, Mouse)

Protein Percentage 99.59%
CDS Percentage 92.55%
Ka/Ks Ratio 0.00507 (Ka = 0.0019, Ks = 0.3688)

Psma6 ENSRNOG00000007114 (Rat)

Gene Details

proteasome (prosome, macropain) subunit, alpha type 6 (Psma6), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000009666, Rat)

Protein Percentage 100.0%
CDS Percentage 93.09%
Ka/Ks Ratio 0.001 (Ka = 0.0003, Ks = 0.346)

Genome Location

Sequence Coding sequence

Length: 741 bp    Location: 1474619..1449362   Strand: -
Raw sequence   
>XM_004867557.1
ATGTCCCGTGGTTCTAGCGCTGGGTTTGACCGCCATATTACCATTTTTTCGCCCGAGGGTCGGCTCTACCAAGTAGAATATGCTTTTAAGGCTATTAACCAGGGTGGCCTTACATCAGTAGCTGTCAGGGGAAAAGACTGTGCAGTGATTGTCACACAGAAGAAAGTTCCTGATAAATTATTGGATTCCAGTACAGTGACTCACTTATTCAAGATAACAGAAAACATTGGCTGTGTGATGACCGGAATGACAGCCGACAGCAGATCCCAGGTACAGAGGGCACGCTATGAAGCAGCTAATTGGAAATACAAGTATGGCTATGAGATTCCTGTGGACATGCTGTGTAAAAGAATTGCTGATATTTCTCAAGTTTACACACAGAATGCCGAAATGAGGCCACTTGGTTGTTGTATGATTTTAATTGGTATCGATGAAGAACAAGGCCCTCAGGTGTACAAGTGTGACCCTGCAGGTTACTACTGTGGGTTTAAAGCCACTGCAGCAGGTGTGAAACAAACTGAGTCAACCAGCTTCCTTGAAAAAAAAGTGAAGAAGAAATTTGATTGGACATTTGAACAGACAGTGGAAACTGCAATTACGTGCCTGTCTACTGTTCTCTCAATTGATTTCAAACCCTCAGAAATAGAAGTTGGAGTAGTTACAGTTGAAAACCCTAAATTCAGGATTCTTACGGAAGCAGAGATTGATGCTCACCTTGTTGCTCTAGCAGAGAGAGACTAA

Related Sequences

XP_004867614.1 Protein

Psma6 PREDICTED: proteasome subunit alpha type-6 [Heterocephalus glaber]

Length: 246 aa      View alignments
>XP_004867614.1
MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD