Sequence details NCBI ID: XM_004867499.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Rlim
Gene Name ring finger protein, LIM domain interacting, transcript variant X2
Entrez Gene ID 101723344

Database interlinks

Part of NW_004624836.1 (Scaffold)

For more information consult the page for NW_004624836.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ENSCPOG00000003010 (Guinea pig)

Gene Details

Uncharacterized protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002728, Guinea pig)

Protein Percentage 66.49%
CDS Percentage 77.66%
Ka/Ks Ratio 0.39739 (Ka = 0.2114, Ks = 0.532)

RLIM ENSG00000131263 (Human)

Gene Details

ring finger protein, LIM domain interacting

External Links

Gene Match (Ensembl Protein ID: ENSP00000328059, Human)

Protein Percentage 94.61%
CDS Percentage 93.9%
Ka/Ks Ratio 0.12624 (Ka = 0.0259, Ks = 0.2052)

Rlim ENSMUSG00000056537 (Mouse)

Gene Details

ring finger protein, LIM domain interacting

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000112820, Mouse)

Protein Percentage 87.31%
CDS Percentage 86.37%
Ka/Ks Ratio 0.10963 (Ka = 0.062, Ks = 0.5653)

Genome Location

Sequence Coding sequence

Length: 1842 bp    Location: 6257776..6286479   Strand: +
Raw sequence   
>XM_004867499.1
ATGGAAAACTCAGATTCTAATGATAAAGGAAGTGGTGATCAATCTGCAGCACAGCGCAGAAGTCAGATGGACCGATTGGATCGAGAAGAAGCTTTCTATCAATTTGTAAATAACTTGAGTGAAGAAGATTATAGGCTTATGAGAGATAACAATTTGCTAGGCACCCCAGGAGAAAGTACAGAGGAAGAGTTGCTGAGAAGACTACAACAAATTAAAGAGGGTCCACCACCACAAAAATCAGATGAAAATAGAGGTGGTGATTCTTCAGAGGATGTGTCTAATGGTGACTCTATAATAGACTGGCTTAATTCTGTCAGACAAACTGGAAATACAACAAGAAGTGGGCAAAGAGGAAACCAGTCTTGGAGAGCTGTGAGCCGGACTAATCCAAACAGTGGTGATTTCAGATTCAGTTTAGAGATAAATGTTAACCGTAATAATGGGAACCAAAACCCAGAGAGTGAAAATGAGCCATCTTCAAGACGTTCTGGTGGAGAAATTACAGAAAACAATAGCCAAAGGCCAGTGGAAAATCCGCGATCTGAAGCAACATCTGCAAGACCATCTAGATCAGAACGAAATTCAACTGAAACATTAACAACAGAAATCCCACCTGCTAGAGGTCAGAGGAGGGCAAGAAGTAGGAGCCCAGACCATCGGAGAACCAGAGCCAGAGCTGAAAGAAGTAGGTCACCTCTGTATCCAATGAGTGAAATTCCACGAAGATCTCATCATAGTATTTCATCTCAAACTTTTGAGCACCCTTTAGTAAATGAGACCGAGGGAAGCTCTAGAACCCGGCACCATGTGACATTGAGACAACAAATAACTGGACCTGAGCTGTTAAGTAGAGGTCTTTTGGCAGCTTCTGGAACAAGAAATACCTCTCAAGGAGCAGGTTCTTCAGACACAGCCATCAGTGGTGAATCTACAGGATCAGGACAGAGACCTCCAACCATAGTCCTTGACCTTCAAGTCAGAAGAGTTCATCCTGGAAAATACAGACAGAGAGATAGCATAGCTAGCAGAACTCGGTCAAGGTCTCAGACACCAAATAACACTGTTACTTATGAAAGTCAACGAGGAGGTTTTAGGCGTACATTTGCACGTTCTGAGCGGGCAGGTGTGAGAACCTATGTCAGTACCATCAGGATTCCCATTCGTAGAATTTTAAATACTGGTTTAAGTGAGACTACATCTGTTGCAATTCAGACCATGTTACGGCAGATAATGACAGGTTTTGGTGAGTTAAGCTACTTTATGTACAGTGATAGTGATTCAGAACCTAGTGGCTCGGTCCCAAGTGGAAATATGGAAAGGGTAGAGTCACGGAATGGAAGAGGGAGTTCTGGTGGTGGTAGCAGTTCTGGTTCCAGTTCAAGTTCCAGTTCCAGTTCAGGTTCCAGTCCTAGTTCCAGCTCCAGTGGCGAAAGTTCAGAAACTAGCTCAGAGTTGTTTGAAGGCAGTAATGAAGGAAGCTCTTCAGGTGCCAGGCGAGAGGGTCGACATAGGGCCCCAGTCACATTTGATGAAAGTGGCTCTTTACCCTTTCTTAGTCTGGCTCAGTTTTTCCTCTTAAATGAGGATGATGATGACCAACCCAGAGGACTCACCAAAGAACAGATTGACAACTTGGCAATGAGAAGTTTTGGTGAAAACGATGCATTAAAAACCTGTAGTGTTTGCATTACAGAATATACAGAAGGCAACAAACTTCGTAAACTACCTTGTTCTCATGAGTACCATGTCCACTGCATTGATCGCTGGTTATCTGAGAATTCTACCTGTCCCATTTGTCGCAGAGCAGTCTTAGCTTCTGGTAACAGAGAAAGTGTTGTGTAA

Related Sequences

XP_004867556.1 Protein

Rlim PREDICTED: E3 ubiquitin-protein ligase RLIM isoform X2 [Heterocephalus glaber]

Length: 613 aa      
>XP_004867556.1
MENSDSNDKGSGDQSAAQRRSQMDRLDREEAFYQFVNNLSEEDYRLMRDNNLLGTPGESTEEELLRRLQQIKEGPPPQKSDENRGGDSSEDVSNGDSIIDWLNSVRQTGNTTRSGQRGNQSWRAVSRTNPNSGDFRFSLEINVNRNNGNQNPESENEPSSRRSGGEITENNSQRPVENPRSEATSARPSRSERNSTETLTTEIPPARGQRRARSRSPDHRRTRARAERSRSPLYPMSEIPRRSHHSISSQTFEHPLVNETEGSSRTRHHVTLRQQITGPELLSRGLLAASGTRNTSQGAGSSDTAISGESTGSGQRPPTIVLDLQVRRVHPGKYRQRDSIASRTRSRSQTPNNTVTYESQRGGFRRTFARSERAGVRTYVSTIRIPIRRILNTGLSETTSVAIQTMLRQIMTGFGELSYFMYSDSDSEPSGSVPSGNMERVESRNGRGSSGGGSSSGSSSSSSSSSGSSPSSSSSGESSETSSELFEGSNEGSSSGARREGRHRAPVTFDESGSLPFLSLAQFFLLNEDDDDQPRGLTKEQIDNLAMRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLASGNRESVV