Details from NCBI annotation

Gene Symbol Clhc1
Gene Name clathrin heavy chain linker domain containing 1, transcript variant X1
Entrez Gene ID 101711774

Database interlinks

Part of NW_004624833.1 (Scaffold)

For more information consult the page for NW_004624833.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CLHC1 ENSCPOG00000008064 (Guinea pig)

Gene Details

clathrin heavy chain linker domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000007252, Guinea pig)

Protein Percentage 84.64%
CDS Percentage 89.65%
Ka/Ks Ratio 0.29205 (Ka = 0.0776, Ks = 0.2656)

CLHC1 ENSG00000162994 (Human)

Gene Details

clathrin heavy chain linker domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000384869, Human)

Protein Percentage 79.86%
CDS Percentage 86.86%
Ka/Ks Ratio 0.354 (Ka = 0.1116, Ks = 0.3152)

Clhc1 ENSMUSG00000020461 (Mouse)

Gene Details

clathrin heavy chain linker domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000020753, Mouse)

Protein Percentage 70.6%
CDS Percentage 80.17%
Ka/Ks Ratio 0.33352 (Ka = 0.1807, Ks = 0.5417)

Clhc1 ENSRNOG00000004456 (Rat)

Gene Details

clathrin heavy chain linker domain containing 1 (Clhc1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000006085, Rat)

Protein Percentage 70.43%
CDS Percentage 79.6%
Ka/Ks Ratio 0.31932 (Ka = 0.1828, Ks = 0.5724)

Genome Location

Sequence Coding sequence

Length: 1761 bp    Location: 6311959..6371750   Strand: +
>XM_004867275.1
ATGTCGGCCCAAGAAATACATAAACATGCTGTTCTCCCTCCTATCATTAGCAGAAGTGACAAGGAATTTTTGGAAAGTATGCAAAGATACATAATTACAGAAACTGAAAGAGCGGGCTGTAATGAGAAAGGGCCTGCTGATGAATATTATATCATATACAGAAATGTTTTCGATAAGGTCATAGAGTATGTTACCGCATATAAATCCATTCTTACTTCAATCAAAAAAGAATATGATGCCTTTATTGAGACAATGAAGAAAAGCCAGAGAACTGCATTTTATCTCCATGGGAAACTTAAGGCTTTGGCAGCAGGGCCTACAGCTTTGGTATATCACCAGAGAAGAACAATCCAACTGAAGGAAAAAATAAGGATTATTAAAAATAATTCCTTGAAGATTCAATTGCAAATAAATCAACTGAAACAGCTTAGGGCAGAGTATGATGTGAAAGAAGTAAAATACTGTACTTTCATCAAAAATCCTGCAAAACCTATTCCAGGTATGACTCTCCATGAATCTGTCAATTTAGATGCTCTCAGTAAATATATGAAACATCTTGAAGATAAGTATGCAGAAATTAAACAAGCCATGTCAATAAACTATGTACCAGCTCAAAAGAAGGCTGATTTAGATAAGGAAATGATTGTGTTATTAAAAAGGCGAGATGTAGCTGAAAGTCTGAACAAAGAATTACAGTTTCGTTATCAAAGACTACAGATTGTTTCACATGCACTTACTTCATGGGTAAAATCTGATATGAGCAGCTCATTTCAAGACTTCGTGGACCAAATTCAGAAAACCAAAGTATTTACAGGTGACCAAGGCATTGTTGAAGAACTGCTTGAAGATGATCCAAGCAGGGCAAAAGATGCTGAAATTGTGCTGTACTACATTGAAAGGTTCAATGAATTAATCTCACTTGGTGAATATGAAAAGGCAGCTTGTTTTGCAGCAAATAGTCCTAGAAGAATTCTTCGAAACATGAATATAATGAACAAATTTAAAGCTGTTGGGAAAATAAGAGGAAAGCCTCTTCCATTACTCTTATTTTTTGAGGCTATATTTAGCACAAGTCATGCTTTTAGATATCCTGTTGATGCATATCTAACTTTGGAAGGAATCAAATGTGGACTGTCTGAAAAAAGGTTTGATTTAGTTATCAACTGGGTCACCCAAGAAAAGTTAACATTTTCTGAGGAGGCTGGTGATGTGATTAGTGATTATGGGGAGCAGGATACTTTTAACAAGGCCAAGTGTTTGGCTTTAGCTCAAATTATCTACAGCAAATGTGGCCTTCATAAGAAAGCTCTTCTTTGCCTGTGCAAACAGGGTCAGATTCATAGGGCCATGGAATACCTACAGCAGTTTAAAGACTTTACTTCAGGTGACCTGATGCAGCTAATAACATTATGTCCCCAAGCTGAACTAATTCATTCTCTCACTAAAGAAAGCAATGGGAAACCACCATTTTTATCTTTTGGGCTTATTATACTTCATCTGTTCTCTGGAAATATGGAAGAAGTTGGCATTAAACTACTTAAAGAAATAAATAAAGGTGGGAAAGATGCAATAGAACATCTTATGATGAGTGATTCATTTTGCTCGCTAGAAACATGGCAAGACATGGCAGATATATGTTTACAGAATGGCTTTAACAAATTATCTAATGACATCATGTCCATTCTTCGATCTCAGGCTGGAGTTTCAGAAATTTCTGAAGAAGATGAAAAAGTGAACCTAATGGAACATGTTTTTTGGTAG

Related Sequences

XP_004867332.1 Protein

Clhc1 PREDICTED: clathrin heavy chain linker domain-containing protein 1 isoform X1 [Heterocephalus glaber]

Length: 586 aa      View alignments
>XP_004867332.1
MSAQEIHKHAVLPPIISRSDKEFLESMQRYIITETERAGCNEKGPADEYYIIYRNVFDKVIEYVTAYKSILTSIKKEYDAFIETMKKSQRTAFYLHGKLKALAAGPTALVYHQRRTIQLKEKIRIIKNNSLKIQLQINQLKQLRAEYDVKEVKYCTFIKNPAKPIPGMTLHESVNLDALSKYMKHLEDKYAEIKQAMSINYVPAQKKADLDKEMIVLLKRRDVAESLNKELQFRYQRLQIVSHALTSWVKSDMSSSFQDFVDQIQKTKVFTGDQGIVEELLEDDPSRAKDAEIVLYYIERFNELISLGEYEKAACFAANSPRRILRNMNIMNKFKAVGKIRGKPLPLLLFFEAIFSTSHAFRYPVDAYLTLEGIKCGLSEKRFDLVINWVTQEKLTFSEEAGDVISDYGEQDTFNKAKCLALAQIIYSKCGLHKKALLCLCKQGQIHRAMEYLQQFKDFTSGDLMQLITLCPQAELIHSLTKESNGKPPFLSFGLIILHLFSGNMEEVGIKLLKEINKGGKDAIEHLMMSDSFCSLETWQDMADICLQNGFNKLSNDIMSILRSQAGVSEISEEDEKVNLMEHVFW