Sequence details NCBI ID: XM_004866497.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Col17a1
Gene Name collagen, type XVII, alpha 1
Entrez Gene ID 101710063

Database interlinks

Part of NW_004624831.1 (Scaffold)

For more information consult the page for NW_004624831.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL17A1 ENSCPOG00000000997 (Guinea pig)

Gene Details

collagen, type XVII, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000896, Guinea pig)

Protein Percentage 84.18%
CDS Percentage 85.3%
Ka/Ks Ratio 0.26099 (Ka = 0.0979, Ks = 0.375)

COL17A1 ENSG00000065618 (Human)

Gene Details

collagen, type XVII, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000340937, Human)

Protein Percentage 83.05%
CDS Percentage 83.19%
Ka/Ks Ratio 0.21049 (Ka = 0.103, Ks = 0.4892)

Col17a1 ENSMUSG00000025064 (Mouse)

Gene Details

collagen, type XVII, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000084141, Mouse)

Protein Percentage 81.3%
CDS Percentage 80.99%
Ka/Ks Ratio 0.19271 (Ka = 0.1166, Ks = 0.605)

Col17a1 ENSRNOG00000012110 (Rat)

Gene Details

collagen, type XVII, alpha 1 (Col17a1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000016645, Rat)

Protein Percentage 81.51%
CDS Percentage 80.69%
Ka/Ks Ratio 0.18173 (Ka = 0.1157, Ks = 0.6367)

Genome Location

Sequence Coding sequence

Length: 4443 bp    Location: 3190496..3145087   Strand: -
Raw sequence   
>XM_004866497.1
ATGGACGTAACCAAGAGAAACAAGCGAGATGGCACGGAAGTCACTGAAAGAGTTATCACTGAAACAGTAACTACAAGACTTACATCCTTACCACCGAAAGGGGGCACCAGCAATGGCTATGCCAAAGTGGGCTCTCTTGGTGGAGGGGGCCGGCTGGAGAAGCAAAGCCTGACCCACGGCAGCAGCAGCTACATAAGCTCCAGTGGAAGCTTGCGAGGCAACGGCTCCACCTCTAGTTACCGGAGGGCTCAGTCCCCCGCGTCCACCCTGCCCAACTCGCCCGGCTCAACCTTCGAAAGGAAAACCCACGTTGCCCGCCACGGCGTGTACGAAGGGAGCTCCAGTGGCAACTCTTCCCCGGAGTACCCTCGGAAGGAGTTGGCGTCTTCTGCAACCAGAGGGCGGAGCCAAACGCGAGAGAGCGAAATTCGAGTTCGGTTGCAGAGTGCATCACCTTCTACCAGATGGACAGAGTTGGATGATGTCAAGCGTTTGCTCAAGGGCAGCCGATCGGCAAGTGCCAGTCCTACCCGGAACTCATCCCACACACTCCCCATCCCCAAGAAAGGCACGGTGGAGACCAAAGTGGTGACAGCCAGCTCCCAGTCAGTCTCGGGCACCTACGACACCACCATCCTGGACGCCAACCTGCCCTCCCACGTGTGGTCCTCCACCCTGCCCGCGGGGTCCTCCATGGGGACCTATCACAACAACATGACAACCCAGAGCTCATCCCTGCTCAACACCAATGCCTACTCGGCAGGCTCGGTCTTTGGGGTTCCCAACAACCTGGCCCCCTGCTCCCCAACCCTGCAGCCTGGACTCAGCTCCTGCTCCTCAGTGTTTGGAATGCAGAACAACCTGGCCCCCAGCTCAACTGCTCTGTCCCATGGCACAGCTGCCGCTTCAACAGCGTATGGTGTGAAGAAAAATGTGTCCCAGAGCCCTGCTGTTGTGAGCACCGGTGTGTCCACCACCTCTACCTGCACCACCAATGTCCAAAACGATGAGATCTTGCACAAGGACTGCAAGTTCTTGATCCTGGAGAAAGACAACGTGCCTTCCAAGAAGGAGATGGAGCTGCTGATCATGACCAAGGACAGCGGGAAGGTCTTTACTGCGGCCCCCGCCGGCATTGCTGCAACTTCTTTTTCAGAAGACACCCTGAAAAAAGAAAAGGAGGCTGCCTACACTGCTGACACCTGCCTAAAAGCAGACACAAATGGAGATGTGAAGGTTGTCTCCACCAAGGGCAAGTCTGCCTCTGCAGAAACCCATGGTTATGACCACCGCGGAGGTGGAGGGCTGTGGGGGGCCGCGCCCTCCTGGTGCCCCTGCGGCTCCTGCTGCAGCTGGTGGAAGTGGCTGCTGGGCCTGCTGCTCACCTGGCTGCTGCTCCTGGGGCTGCTCTTTGGCCTCATCGCTCTGGCAGAGGATGTGAGAAGGCTGAAAGCCCGTGTGGAGGAGCTGGAGAGGGGCCAGGGCGGCGTGCTTTCCTACGAGGACAAGATGGAAAGGAGCCACAGGGAGCGGCTCCAGGGTGCCACGCCCGGCCAGGGAGCAGGCACTGGCAGGGCCGGGTTCGAGGGCGGCCTCAGCCAGGAGGAGCTCTGGGTGTTCGTGAAGAACAAGCTCATGCAGGAGCAGGAGAACGGAAACCTCCGAGGAAGCCCTGGCCCTAAAGGTGACATGGGAAGTCCAGGTCCAAAAGGAGACCGAGGCCTTCCCGGGACTCCAGGTTTCCCTGGGCCCTTGGGCCACCCCGGTCCGGTAGGACCAAAAGGACAAAAAGGCAGTGTGGGAGACCCCGGCATGGAAGGACCCATGGGCCAAAGAGGGAGAGAAGGCCCCATGGGGCCCCGTGGTGAACCAGGGCCTCCTGGATTTGGGGAGAAAGGGGACAGAGGGGCTGCTGGTGAACCAGGTCTGCAGGGCCCTCCTGGTGTCCCAGGTTCTGTGGGTCCCAAAGGTTCCAGTGGCTCGCCGGGCCCCCACGGACCCCCAGGCTCTATGGGTGTCCAAGGGCCCAGAGGTGAAGTGGGACTTCCTGGCACTAAAGGTGACAAAGGGCTCATGGGGCCAACAGGACCCAAAGGTGACCAGGGTGAGAAAGGACCTCGAGGGCTCACAGGTGAGCCTGGCACCAGAGGTTTGCCTGGGGCTGTGGGCGAACCCGGAGCTAAAGGAGCAATGGGCCCCGCTGGCCCCGATGGACAGCAAGGCCTAAGAGGTGAACAGGGCCTGACGGGTATGCCTGGAGCCCGAGGCCCTCCGGGACCTTCTGGAGACCCAGGAAAGCCAGGTCTCACAGGACCCCCAGGACCCCAGGGACTTCCCGGGTCCCCTGGCCGACACGGGAGTAAAGGTGAACCAGGTGCCCCAGGCAGGATCATGACTTCAGATGGCTCATCAATGGTCACTGTCGCAGGCCCCCCAGGGCCTCCTGGCGTCATGGGACCTCCAGGACCTCCAGGTTCTCCAGGTCCTGCTGGCCCTGCTGGTCTCCCAGGACAGCAAGAAGGTGTTGACTTACGAGGTCCCCCAGGCCCGCCTGGGCCACGAGGACCGCCAGGGCTGTCTATCCCAGGCCCACCCGGACCCCGAGGCCCAGCAGGGGAAGGCTTGCCAGGCCCACCAGGCCCGCCTGGATCTCTCCTGACGGACTCAGAAACCTTCTTCTCCGGCCCCCCCGGCCCCCCCGGCCCCCCAGGCCCCAAGGGAGACCAAGGTCCCCCAGGCCCCCGAGGACATCAAGGCGAGCAAGGCCTCCCAGGGCTCCTGGCCTCAGATGGCAGCTCTCTTGGATTCAACCTGCAGGGACCTCCAGGCCCACCTGGTCCGCAGGGACCCAAAGGTGACAAAGGTGACCCTGGCATGCCTGGTGCTCCCTCTCGAGTGGGGCCACCTTCTCTTCCTGCAGGGGGCTCCTCCAGCACCGTGTACACGCCTGGCCCACCCGGCCCACCAGGGCCCCCAGGGCCTCCAGGCTCCCTCAGAAGCTCTGCCCTGGAGATCCGGCAGCACCTCTCTGAGTACCTGCAGAGTGACAGCATCAGGGCCTACCTGTCTGGAGCTCAGGGCCCCCCGGGCCCCCCTGGCCCCCCAGGGCCCATCAGCACCATCACAGGCCAGACTTTTGAGTACTCAGAGCTGGCCAGGCACGTTGTGAGCTACCTGCAGGCTTCCGGCTACAGTGTCGGCATGTCCTCTGGCTCCATCTCCTCTCAGGACATCCTGGCCTTGCTGCAGCGGGAAGATGTACTCCAGTATCTGCGGCAGTACCTGACAGGCCCTCGGGGTCCTCCGGGGCCCCCAGGAGCCAGCGGTGATGGGGCCCTCCTGTCATCTCTGAACTACTCGGAGCTAAGCAAGCGCATCCTCAGCTACATGTCGAGTTCTGGCGTCAGCATTGGGCTTCCTGGCCCGCCAGGCCCCCCTGGCCTGCCTGGGACATCTTACGAGGAGCTGCTGGCCTTGCTCCAAGGGTCTGAATACAGAGGCATCATCGGACCCCCAGGGCCCCCGGGGCCCCCCGGGACCCCAGGCAGTGCGTGGTCCAGCATCAGCGTGGAGGACCTGTCATCATATTTGCACACTGCAGGCTTGTCATCCATCCCAGGCCCACCAGGCCCTCCCGGACCCCCAGGTCCTCGGGGGCCCCCAGGTGTCTCAGCAGCTCTGGCAACTTATGCTGCTGAGAACAATGACAACTTCCGGAGCGAGCTGATAAGCTACCTCACAAGTCCTGACGTGCGCAGTTTCATCGTGGGGCCCCCAGGGCCCCCGGGGCCACAGGGGCCCCCTGGAGACAGTCGCCTGGTGTCAAGAGATGGCTCCTACAGCTGGAGTAGCAGCTCTTCCGTCAGAGAGGGCTCCACCTACGGCTCTTCAGTGGGCGCCAGAGGAGCCAACGGAGGCTCCCTGGGAGGAGGTGGAGCGTTTGGAGCAGGAGATGGGGGCGCCTATGGCACCGACGTTGGCCCCGGTGGAGGCTATGGGACAGCAGCAGAAGGGGCTGCGTACGAAGGCAATGGTGCTTCACTCCGGGCTGGCTTCAGAGACCTGGACTACAACGAGCTAGCTGTGCGGGTGTCAGAGAGCCTGCAGCGTCAAGGCTTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCACCAGGCCAGCCTGGGCCCCAAGGGCCCCCCGGCATCAGCAAGGTCTTCTCCGCCTACAGCAACATAACCCAGGACCTCATGGACTTCTTCCGAACTCATGGGGCCATTCCAGGCCCGCCAGGGCAGCAGGGAGAAGTGGGCATCCCCGGACCTAAAGGTGACAGGGGCCCCGCCGGACCACGAGGACTTCCTGGACCGCCTGGCTCTCCGGGGCCCAAGGGGGAAAAGGGAGACAGAGGCGACCAAGTCTACGTTGGGCGAAGGAAGAGAAGTGTCGCCATCAAGCCATAG

Related Sequences

XP_004866554.1 Protein

Col17a1 PREDICTED: collagen alpha-1(XVII) chain [Heterocephalus glaber]

Length: 1480 aa      View alignments
>XP_004866554.1
MDVTKRNKRDGTEVTERVITETVTTRLTSLPPKGGTSNGYAKVGSLGGGGRLEKQSLTHGSSSYISSSGSLRGNGSTSSYRRAQSPASTLPNSPGSTFERKTHVARHGVYEGSSSGNSSPEYPRKELASSATRGRSQTRESEIRVRLQSASPSTRWTELDDVKRLLKGSRSASASPTRNSSHTLPIPKKGTVETKVVTASSQSVSGTYDTTILDANLPSHVWSSTLPAGSSMGTYHNNMTTQSSSLLNTNAYSAGSVFGVPNNLAPCSPTLQPGLSSCSSVFGMQNNLAPSSTALSHGTAAASTAYGVKKNVSQSPAVVSTGVSTTSTCTTNVQNDEILHKDCKFLILEKDNVPSKKEMELLIMTKDSGKVFTAAPAGIAATSFSEDTLKKEKEAAYTADTCLKADTNGDVKVVSTKGKSASAETHGYDHRGGGGLWGAAPSWCPCGSCCSWWKWLLGLLLTWLLLLGLLFGLIALAEDVRRLKARVEELERGQGGVLSYEDKMERSHRERLQGATPGQGAGTGRAGFEGGLSQEELWVFVKNKLMQEQENGNLRGSPGPKGDMGSPGPKGDRGLPGTPGFPGPLGHPGPVGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEPGPPGFGEKGDRGAAGEPGLQGPPGVPGSVGPKGSSGSPGPHGPPGSMGVQGPRGEVGLPGTKGDKGLMGPTGPKGDQGEKGPRGLTGEPGTRGLPGAVGEPGAKGAMGPAGPDGQQGLRGEQGLTGMPGARGPPGPSGDPGKPGLTGPPGPQGLPGSPGRHGSKGEPGAPGRIMTSDGSSMVTVAGPPGPPGVMGPPGPPGSPGPAGPAGLPGQQEGVDLRGPPGPPGPRGPPGLSIPGPPGPRGPAGEGLPGPPGPPGSLLTDSETFFSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGLLASDGSSLGFNLQGPPGPPGPQGPKGDKGDPGMPGAPSRVGPPSLPAGGSSSTVYTPGPPGPPGPPGPPGSLRSSALEIRQHLSEYLQSDSIRAYLSGAQGPPGPPGPPGPISTITGQTFEYSELARHVVSYLQASGYSVGMSSGSISSQDILALLQREDVLQYLRQYLTGPRGPPGPPGASGDGALLSSLNYSELSKRILSYMSSSGVSIGLPGPPGPPGLPGTSYEELLALLQGSEYRGIIGPPGPPGPPGTPGSAWSSISVEDLSSYLHTAGLSSIPGPPGPPGPPGPRGPPGVSAALATYAAENNDNFRSELISYLTSPDVRSFIVGPPGPPGPQGPPGDSRLVSRDGSYSWSSSSSVREGSTYGSSVGARGANGGSLGGGGAFGAGDGGAYGTDVGPGGGYGTAAEGAAYEGNGASLRAGFRDLDYNELAVRVSESLQRQGLLQGMAYTVQGPPGQPGPQGPPGISKVFSAYSNITQDLMDFFRTHGAIPGPPGQQGEVGIPGPKGDRGPAGPRGLPGPPGSPGPKGEKGDRGDQVYVGRRKRSVAIKP