Details from NCBI annotation

Gene Symbol Obfc1
Gene Name oligonucleotide/oligosaccharide-binding fold containing 1, transcript variant X3
Entrez Gene ID 101708635

Database interlinks

Part of NW_004624831.1 (Scaffold)

For more information consult the page for NW_004624831.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

OBFC1 ENSCPOG00000006273 (Guinea pig)

Gene Details

oligonucleotide/oligosaccharide-binding fold containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005656, Guinea pig)

Protein Percentage 82.93%
CDS Percentage 88.71%
Ka/Ks Ratio 0.42856 (Ka = 0.094, Ks = 0.2195)

OBFC1 ENSG00000107960 (Human)

Gene Details

oligonucleotide/oligosaccharide-binding fold containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000224950, Human)

Protein Percentage 83.11%
CDS Percentage 85.92%
Ka/Ks Ratio 0.30478 (Ka = 0.1051, Ks = 0.3448)

Obfc1 ENSMUSG00000042694 (Mouse)

Gene Details

oligonucleotide/oligosaccharide-binding fold containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000040944, Mouse)

Protein Percentage 66.13%
CDS Percentage 76.44%
Ka/Ks Ratio 0.35289 (Ka = 0.2254, Ks = 0.6387)

Obfc1 ENSRNOG00000020376 (Rat)

Gene Details

oligonucleotide/oligosaccharide-binding fold containing 1 (Obfc1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000027614, Rat)

Protein Percentage 66.04%
CDS Percentage 75.94%
Ka/Ks Ratio 0.29809 (Ka = 0.2189, Ks = 0.7344)

Genome Location

Sequence Coding sequence

Length: 1128 bp    Location: 3030382..2999061   Strand: -
>XM_004866494.1
ATGCCACAGTGCAGCCTCTTGATGCAGCCTGGATCTAGCCGGTGTGATGAGACTCCTTCCCTCCTGTGGGGTTTGGATCCTGTGTTTGTAGCCTTTGCGAAACTCTACATCAGGGATATCCTGGCCATGAAGGAATCCCACCAAGTTCCAGGTATCTTTTTGTATAATGGGCATCCAATAAAACAAATAGACATCCTGGGAACCGTCATTGGAGTGAGAGAAAGAGATGCTTTCTACAGTTACGGAGTGGATGATAGCACAGGAGTTATAAACTGCATCTGCTGGAAAAAGCTGAGCAATACTGAGACTTCCCCAGCTGCTCCAAGCTCGGCAAGAGAGCTGAGTGTGATCTCAGAGCTTGAGAAGCTGCAAGAGACCATCGAGCAGAGAACCAAGATAGAAATTGGGGACGTTATCCGAATCAGAGGCTACATCCGCACATACAGGGAAGAGCGGGAAATCCATGCTGCCACTTACTATAAAGTGGATGACCCGATGTGGAACATTCAAATTGCAAGAATGCTTGAGCTGCCTGATCTCTACAGGAGAGTATATGACCAGCCCTTCCACAGCCAGGCCTCAGAACAAGAAGAGGCAAGCAGCAATCCAGGTGCCCTGGACCTTGCCAGCCTCACGTGTTTGCTGAGTGAAAAAGTCAAAGAATTCCTCCTGGAGAAGAAAGTGCACACCTTCTACCAGCGGGAGTTGGAAGCGGTGGCCTCCTTGCTGTCCCTTGCCAATCAGCCTGTGATTCGTGGCCCCAGCTCCAACCAGATGGAGTTTCAAAACACCACCACTTCCAAGGCCATTCATAGTATATTTAAGAATGCTATACAGCTGCTGCAGGAGAAAGGACTCGTTTTCCAGAAGGATGATGGTTTTGATAACCTGTACTATGTAACCAGAGAAGACAAGAACCTGCACAGAAGGATCCACAGGATCATTCAGGAAGACTGCCAGAAGCCAAATCATGTGGGGAAGGGCTGTCACTTCCGGCACATCTTGGCCTGTGCACACCTGAGCGTCCACCCGGGCCTGAGTGAGGCTGTGCTGCAGCAGGTGCTGGAGCTCCTGGAGGACCAGAGTGACATCGTGGGCACGGCAGAGCGCTACTACATGGCCTTCTGA

Related Sequences

XP_004866551.1 Protein

Obfc1 PREDICTED: CST complex subunit STN1 isoform X3 [Heterocephalus glaber]

Length: 375 aa      View alignments
>XP_004866551.1
MPQCSLLMQPGSSRCDETPSLLWGLDPVFVAFAKLYIRDILAMKESHQVPGIFLYNGHPIKQIDILGTVIGVRERDAFYSYGVDDSTGVINCICWKKLSNTETSPAAPSSARELSVISELEKLQETIEQRTKIEIGDVIRIRGYIRTYREEREIHAATYYKVDDPMWNIQIARMLELPDLYRRVYDQPFHSQASEQEEASSNPGALDLASLTCLLSEKVKEFLLEKKVHTFYQRELEAVASLLSLANQPVIRGPSSNQMEFQNTTTSKAIHSIFKNAIQLLQEKGLVFQKDDGFDNLYYVTREDKNLHRRIHRIIQEDCQKPNHVGKGCHFRHILACAHLSVHPGLSEAVLQQVLELLEDQSDIVGTAERYYMAF