Sequence details NCBI ID: XM_004866424.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Psd
Gene Name pleckstrin and Sec7 domain containing, transcript variant X2
Entrez Gene ID 101717970

Database interlinks

Part of NW_004624831.1 (Scaffold)

For more information consult the page for NW_004624831.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PSD ENSCPOG00000000156 (Guinea pig)

Gene Details

pleckstrin and Sec7 domain containing

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000136, Guinea pig)

Protein Percentage 91.65%
CDS Percentage 89.91%
Ka/Ks Ratio 0.15084 (Ka = 0.0478, Ks = 0.317)

PSD ENSG00000059915 (Human)

Gene Details

pleckstrin and Sec7 domain containing

External Links

Gene Match (Ensembl Protein ID: ENSP00000020673, Human)

Protein Percentage 91.13%
CDS Percentage 88.8%
Ka/Ks Ratio 0.12292 (Ka = 0.0492, Ks = 0.4001)

Psd ENSMUSG00000037126 (Mouse)

Gene Details

pleckstrin and Sec7 domain containing

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000039728, Mouse)

Protein Percentage 89.19%
CDS Percentage 86.74%
Ka/Ks Ratio 0.12154 (Ka = 0.0586, Ks = 0.4825)

Psd ENSRNOG00000019435 (Rat)

Gene Details

pleckstrin and Sec7 domain containing (Psd), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000026378, Rat)

Protein Percentage 88.99%
CDS Percentage 86.43%
Ka/Ks Ratio 0.11555 (Ka = 0.059, Ks = 0.5108)

Genome Location

Sequence Coding sequence

Length: 3144 bp    Location: 1823681..1810374   Strand: -
Raw sequence   
>XM_004866424.1
ATGGCCCAGGGTGCCATGCGCTTCTGCTCAGAAGGCGACTGTGCTATCTCCCCACCACGATGCCCTCGTCGCTGGCTCCCCGAAGGCCCAGTACCCCAGAGCCCCCCCGCCAGCATGTATGGCAGCACAGGCTCCCTGCTGCGGCGAGTGGCAGGCCCAGGGCCTCGAGGCCGGGACCTGGGACGTGTGACGGCACCCTGTACACCTCTGCGAGGTCCTCCCTCTGCTCATGTTGCTCCCTCACCCTGGGCACCCTCCTCACCCCCTGGGCAGCCCCCACCAGGGACCCGGAGCTCTGTGGTCATCTTCCGCTTTGTGGAGAAGGCCAGCGTGAGGCCACTGAATGGGCTACCCGCGTCTGGAGGCCTGAGTCGGAGCTGGGACCTGGGCGGGGTGTCTTCTTCCAGGCCCACCCCAGCCCTTGGTCCTGGCTCCACCCGAAAGTTTCGGCTGGAGGCATCCACATCAGACCCCCTTCCGGCTGCAGGAGGCTCTGCCCTTCCTGGCAGCGAGAACTCCCTCTGTGGGCCACCAGTCCCACCCCAGGTTGGGGCAGATGGCTTGTACTGCTCTCTCCCTAACGGCCTGGGGGCCCCTCCTGAGCACCTAGCCACACTATGCCGAGGACCTGCTGACACTGGGCTCCTGAACCAGGGGGACCCCTGGTCCTCCCCCAAGGAAGTCTCCTCCCATGCCCAGAGGATTGCTCGAGCCAAATGGGAATTCTTCTATGGCTCCTTGGACCCCCACAGCTCAGGTGCTAAGCCCCCGGAGCAGGCGGTCCCCGCCCCCGCCACGGTGGGCTCGGGGCCGGGCTCTGGGGTGGCTGTGGGGCGAGCAGCTGAGTACTCTGAGACGGACTTGGATGCGGTGCCCCTGAGGTGCTACCGAGAGACCAACATTGACGAGGTGCTGGCTGAGCGAGAGGAAGCCGACTCGGCCATTGAGAGTCAGCCCAGCTCTGAGGGCCTGCCTGGCACTGCCCGCCCGGCCGCCCCACACCCTGGCCTGTGCCCCAGGCCTTGCTCCAGCCTGGGCAGTGGCGATGAGGATGAGGATGTGGATGACGAGGTGTTTGAGGCCTCCGAGGGGGCCCGGCCAGGGAGCCGGATGCCTCGCCCTGGGCCTGTCAAGTCACCCGTGCCCTTCCTCCCTGGGACCAGCCCTTCTGCCAATGGGCCTGACTCTTTCAGTTGTGTGTTCGAAGCCATCCTGGAGTCACACCGGGCCAAGGGGACCTCCTACACCAGCCTCGCCTCTCTGGAGGCCCTGGCCTCACCTGGCCCAACCCAGAGCCCCTTCTTCACCTTTGAGCTGCCTCCCCAGCCCCCTGCGCCCCGGCCTGACCCACCTGCTCCCGCCCCACTTGCCCCTCGGGAGCCGGATTCCGGTACCAGCTCTGCTGCTGACGGTCCTTGGACACCAAGAGGGGAGGAGGAGGAGGAGGAGGAGGCAGAGTCTGGAGCCCAGCTGCCCCCAGGGAGGGAGACCCCTAGTCCCTGCCACTCAGAGGACGGCCTCGGGCGGGGGGCAGCACCCCTGGGCAGGGGCTGGCGGCCCAGGGCGGATCTGGGTGACCTCTGGGAGCTCTGCCCCACCCTGACCTGCTGTCCTCCCGGCAGTGAGCCACCCCTGAGTCAGCTGGTCTCAGACTCAGACTCAGAGCTGGACAGCACAGAGCGGCTGGCGCTGGGAAGCACGGATACCTTGTCCAATGGGCAGAAAGCGGATCTGGAGGCCGCACAGCGCCTTGCCAAGAGGCTGTACCGCCTAGATGGCTTCAGGAAGGCTGATGTGGCCCGGCACCTGGGCAAGAACAATGACTTCAGCAAGCTGGTGGCGGGAGAGTATCTCAAGTTCTTTGTCTTCACGGGCATGACTCTGGACCAAGCTCTCAGGGTGTTTCTCAAGGAGCTGGCCCTAATGGGTGAGACCCAGGAACGGGAGCGTGTGCTGGCCCACTTCTCCCAGCGGTACTTCCAGTGCAACCCTGAAGCTTTGTCCTCAGAGGACGGCGCCCACACACTGACCTGCGCCCTCATGCTACTCAACACTGATCTCCACGGCCACAACATAGGGAAGCGCATGACCTGTGGGGACTTCATCGGGAACCTGGAGGGCCTCAACGACGGAGGCGACTTCCCCAGGGAGCTGCTTAAGGCCTTGTACAGCTCCATCAAGAATGAGAAGCTGCAGTGGGCCATAGACGAGGAAGAGCTGAGGCGCTCCCTGTCTGAACTGGCCGACCCCAACCCCAAGGTCATCAAGCGGGTCAGCGGGGGCAGCGGCAGCGGCTCCAGCCCTTTCCTGGACCTGACTCCTGAGCCCGGGGCCGCCGTTTACAAGCACGGGTCCCTGGTGCGCAAGGTGCACGCAGACCCCGACTGCCGGAAGACGCCTCGGGGCAAGCGGGGCTGGAAGAGCTTCCACGGGATCCTCAAGGGCATGATTCTCTACTTGCAGAAGGAGGAGTACCAGCCCGGGAAGGCGCTCTCTGAGGCCGAGCTCAAGAACGCCATCAGCATCCACCACGCCCTGGCCACTCGAGCCAGCGACTACAGCAAGAGGCCCCATGTTTTCTACCTGCGCACGGCGGACTGGCGGGTCTTCCTCTTCCAGGCTCCGAGCCTGGAGCAGATGCAGTCCTGGATCACTCGCATCAACGTGGTGGCCGCCATGTTCTCTGCACCCCCCTTCCCAGCTGCTGTCAGTTCCCAGAAGAAGTTCAGCCGTCCGCTGCTGCCCAGTGCTGCCACCCGGCTCTCCCAGGAAGAGCAGGTGCGGACCCACGAAGCCAAGCTGAAGGCCATGGCAAGTGAGCTTCGTGAGCACCGGGCCACCCAGCTGGGGAAGAAGGCCCGAGGCAAGGAGGCGGATGAGCAGCGGCAGAAGGAGGCCTACCTGGAGTTCGAGAAATCTCGCTATGGCACCTATGCAGCGCTGCTCCGGGTCAAGCTGAAGGCCGCCGGCGAGGGGCTGGACACCATGGAGGCCGTGCTGGCCCAGGCCGGGAGCGAGGAGGAGGCCCGTCCCCCGCCTCGTCGGGGCCCCGCCCCACAGCCTGACCCCAGCGGCCCGCCGCGGGCCCAGCGCCCTGGCTCAGCAGCGCGGGCCGGCGCGGGCAGCGCACCCCGGAAGCCCTGA

Related Sequences

XP_004866481.1 Protein

Psd PREDICTED: PH and SEC7 domain-containing protein 1 isoform X2 [Heterocephalus glaber]

Length: 1047 aa      View alignments
>XP_004866481.1
MAQGAMRFCSEGDCAISPPRCPRRWLPEGPVPQSPPASMYGSTGSLLRRVAGPGPRGRDLGRVTAPCTPLRGPPSAHVAPSPWAPSSPPGQPPPGTRSSVVIFRFVEKASVRPLNGLPASGGLSRSWDLGGVSSSRPTPALGPGSTRKFRLEASTSDPLPAAGGSALPGSENSLCGPPVPPQVGADGLYCSLPNGLGAPPEHLATLCRGPADTGLLNQGDPWSSPKEVSSHAQRIARAKWEFFYGSLDPHSSGAKPPEQAVPAPATVGSGPGSGVAVGRAAEYSETDLDAVPLRCYRETNIDEVLAEREEADSAIESQPSSEGLPGTARPAAPHPGLCPRPCSSLGSGDEDEDVDDEVFEASEGARPGSRMPRPGPVKSPVPFLPGTSPSANGPDSFSCVFEAILESHRAKGTSYTSLASLEALASPGPTQSPFFTFELPPQPPAPRPDPPAPAPLAPREPDSGTSSAADGPWTPRGEEEEEEEAESGAQLPPGRETPSPCHSEDGLGRGAAPLGRGWRPRADLGDLWELCPTLTCCPPGSEPPLSQLVSDSDSELDSTERLALGSTDTLSNGQKADLEAAQRLAKRLYRLDGFRKADVARHLGKNNDFSKLVAGEYLKFFVFTGMTLDQALRVFLKELALMGETQERERVLAHFSQRYFQCNPEALSSEDGAHTLTCALMLLNTDLHGHNIGKRMTCGDFIGNLEGLNDGGDFPRELLKALYSSIKNEKLQWAIDEEELRRSLSELADPNPKVIKRVSGGSGSGSSPFLDLTPEPGAAVYKHGSLVRKVHADPDCRKTPRGKRGWKSFHGILKGMILYLQKEEYQPGKALSEAELKNAISIHHALATRASDYSKRPHVFYLRTADWRVFLFQAPSLEQMQSWITRINVVAAMFSAPPFPAAVSSQKKFSRPLLPSAATRLSQEEQVRTHEAKLKAMASELREHRATQLGKKARGKEADEQRQKEAYLEFEKSRYGTYAALLRVKLKAAGEGLDTMEAVLAQAGSEEEARPPPRRGPAPQPDPSGPPRAQRPGSAARAGAGSAPRKP