Details from NCBI annotation

Gene Symbol Ldb1
Gene Name LIM domain binding 1, transcript variant X5
Entrez Gene ID 101706605

Database interlinks

Part of NW_004624831.1 (Scaffold)

For more information consult the page for NW_004624831.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LDB1 ENSCPOG00000010311 (Guinea pig)

Gene Details

LIM domain binding 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009260, Guinea pig)

Protein Percentage 99.75%
CDS Percentage 95.75%
Ka/Ks Ratio 0.01272 (Ka = 0.0031, Ks = 0.246)

LDB1 ENSG00000198728 (Human)

Gene Details

LIM domain binding 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000392466, Human)

Protein Percentage 99.76%
CDS Percentage 94.7%
Ka/Ks Ratio 0.00912 (Ka = 0.0031, Ks = 0.335)

Ldb1 ENSMUSG00000025223 (Mouse)

Gene Details

LIM domain binding 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000118546, Mouse)

Protein Percentage 99.51%
CDS Percentage 93.89%
Ka/Ks Ratio 0.01056 (Ka = 0.0041, Ks = 0.3875)

Ldb1 ENSRNOG00000018468 (Rat)

Gene Details

LIM domain binding 1 (Ldb1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000042807, Rat)

Protein Percentage 99.46%
CDS Percentage 93.21%
Ka/Ks Ratio 0.01005 (Ka = 0.0045, Ks = 0.4473)

Genome Location

Sequence Coding sequence

Length: 1230 bp    Location: 1584400..1573061   Strand: -
>XM_004866386.1
ATGTCAGTGGGCTGTGCCTGTCCCGGTTGTTCCTCAAAGTCATTCAAGCTGTACTCGCCGAAGGAGCCCCCAAACGGCAACGCCTTCCCCCCGTTTCATCCCGGCACCATGCTGGATAGGGATGTGGGCCCAACTCCCATGTACCCGCCTACCTACCTGGAGCCTGGGATTGGGAGGCACACACCATATGGCAACCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCTTCAGAACTGGACAGAGGAGTGTGACAATCTCTGGTGGGATGCTTTCACAACAGAGTTCTTTGAGGACGATGCCATGTTAACCATCACTTTCTGCCTGGAGGACGGACCAAAGAGATACACCATCGGCCGGACCCTGATTCCACGCTACTTCCGCAGCATTTTTGAAGGGGGTGCTACAGAGCTCTATTACGTGCTTAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTCACCCAGGTGTGTGTGGAGGGCCGGCTGTACCTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAGCACCGAGAGCTCATTCCCCGGAGCATCCTAGCCATGCATGCCCAGGACCCCCAGATGTTGGATCAGCTTTCCAAAAATATTACCCGGTGTGGGCTGTCCAATTCTACTCTCAACTACCTCCGACTGTGTGTGATACTCGAGCCCATGCAGGAGCTCATGTCCCGCCACAAGACCTACAGCCTCAGCCCGCGAGACTGCCTCAAGACCTGCCTTTTCCAGAAGTGGCAGCGCATGGTGGCGCCCCCCGCGGAACCCACGCGGCAGCAGCCCAGCAAACGGCGGAAACGGAAGATGTCGGGGGGCAGCACCATGAGCTCCGGGGGCGGCAACGCCAACAACAGCAACAGCAAGAAGAAGAGCCCAGCCTCCACCTTCGCCCTCTCCAGCCAGGATGTGATGGTGGTGGGGGAGCCCACCCTGATGGGCGGGGAGTTCGGGGACGAGGACGAGAGGCTCATCACCCGGCTGGAGAACACGCAGTTTGACGCGGCCAACGGCATTGACGACGAGGACAGCTTTAACAACTCCCCCGCACTGGGCGCCAACAGCCCCTGGAACAGCAAGCCGCCGTCCAGCCAGGAGAGCAAATCGGAGAACCCCACGTCACAGGCCTCCCAGTAA

Related Sequences

XP_004866443.1 Protein

Ldb1 PREDICTED: LIM domain-binding protein 1 isoform X5 [Heterocephalus glaber]

Length: 409 aa      View alignments
>XP_004866443.1
MSVGCACPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNANNSNSKKKSPASTFALSSQDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ