Sequence details NCBI ID: XM_004866381.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Hps6
Gene Name Hermansky-Pudlak syndrome 6
Entrez Gene ID 101706231

Database interlinks

Part of NW_004624831.1 (Scaffold)

For more information consult the page for NW_004624831.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

HPS6 ENSCPOG00000006084 (Guinea pig)

Gene Details

Hermansky-Pudlak syndrome 6

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005488, Guinea pig)

Protein Percentage 85.16%
CDS Percentage 86.54%
Ka/Ks Ratio 0.2313 (Ka = 0.0845, Ks = 0.3652)

HPS6 ENSG00000166189 (Human)

Gene Details

Hermansky-Pudlak syndrome 6

External Links

Gene Match (Ensembl Protein ID: ENSP00000299238, Human)

Protein Percentage 81.91%
CDS Percentage 83.66%
Ka/Ks Ratio 0.22141 (Ka = 0.106, Ks = 0.479)

Hps6 ENSMUSG00000074811 (Mouse)

Gene Details

Hermansky-Pudlak syndrome 6

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000096991, Mouse)

Protein Percentage 77.15%
CDS Percentage 78.62%
Ka/Ks Ratio 0.23272 (Ka = 0.1512, Ks = 0.6495)

Hps6 ENSRNOG00000018433 (Rat)

Gene Details

Hermansky-Pudlak syndrome 6 (Hps6), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000024898, Rat)

Protein Percentage 76.52%
CDS Percentage 77.53%
Ka/Ks Ratio 0.21376 (Ka = 0.1557, Ks = 0.7284)

Genome Location

Sequence Coding sequence

Length: 2382 bp    Location: 1524330..1526821   Strand: +
Raw sequence   
>XM_004866381.1
ATGAAGCGCGCGGCGACGCTGCGCCTGGTCTCCGACCTGAGCGACTTCAGCGGCGCGGCGCGGCTCCGGGAGCTGCTGGCCCGGGACCCCGCGGTGCGCGTGCGCTGCAGCGCCGACGGCCGACACCTGCTGCTGCTGAGCGGCCCCGGGGCGCCGACCCCGCAGCTGCTGGTGGCCGCTCGCGGGCCGGGCGCGGGGCTGGAGCGGGCCTGGCCCGAGGCCCGCGCCGCGCCGCTGGACGCCTTCTTCCTGGCGTGGCCGGCGCGGCCCGCTCTGGCGCTGCTGTGGGAGAGCGGCCTGACGGAGCTGTGGGGCGCCGACCTGGGCCCCTCCTGGCGGCCGCTGCACAACACCGAACTGTATCCGCGCGGCGCGGCCCGCGTGGCGGCGGTGGTGGCGCCCCGAGGCCGCCTGGTGTGGTGCGAGAAGCGACCGGACGGCGGCCACCGCGTGTGCGTCCGCACCTTGGAGCCGGGTGGGGAGGACGGCGCCCGCCTGGGCCGCACGCATGTCCTGCTGCACCATTGCCCGCCCTTCCACCTGCTGGCCTCTCGCAAGGACGTCTTCCTGCTGCCCACTGCCTCCACCTGGCCTGGTGCGTCCCACATCCTGCTCACTTGGAGCCCGAGCAAGGGCAAGGTGACGGTGGCTGCCCCGCGTCTCGGCCTCTCCTACAGTAAAAACCTGAATCCCAAGCAAGGGGACACCTGGGACTTCCGAACCCTGCTCCGAGGCCTTCCTGGGTTGCTGTCCCCCGGAGAGCCATTGGCTGCCCATACCTGGGCCCCAACTCCCCAGGGCCTGCTGTTGCTGGACTCCAGGGGCACCGTGAGCCTAGTGCAGGCCCACGGTAGTATCCGAACCGTGGGTGCCCTGCAGGAGGCCCCTGGAGAGCTGGAGGGCTCTGCCGCCCTGGGAACATTCCGTGGCACTCTGGCCTGTGGGCTTGGCGCCACCTTAGAGCTTCTGGACTTGAGCACCGGGCGGCTGCTGGAGCGAAAGGTCCTCAGTACAGACAGTGTCCATTTGCTGGAGCCCCCAGCCCTGGGCATGCAGGATGAGGAAGATCTAGAGACCCGAGGGGGCCTTCGTTTGCTTTCAGCCTTGGGTCTATTTCATGTGGGCTGGGAAGCCCCCCAGTCCCTTGAGCTGCCTTCAGCCACGGACTTGGTATTTGAGGAGGCCTGTGGGTACTACCAGCGTCGAAGCCTGCGGGGTGCCCAGCTCACTCCGGAGGAACTGAGGCACAACAGTACGTTCCAAGCACCTCAAGCCCTGGCCTCCGTCCTCCAGGGCCACCTGCCCCCGTCTGCACTGTTGACTACCCTGCGGGCTGAGCTTCGGGATTACCGGGGCCTAGAGCAGCTCAAGGCCCAGCTGGTGGCCGGGGAGGAGGAGGAGGCTGTCTGGACCGAGCTGGCCCAGCAGGAAGTGGCTCGCCTGCTGAGGACCGAGTTGACAGGAGAGCAGCTGGCCCAGCTCAACACTGTTTTCCAAGCTCTTCCTTCAGCAGCCTGGGGTGCCGTTCTTCGGGCCCTGCAGCTACAGCCAGATGAGAATGGCATGCTGAGCTCCCAGGCACCCCCTGATGTGTGGAAAAAGGTGCTGGCGGGTACAACAACTGGAAAGGAACCCCCCAATGGGATATTGCCGCCCTTTGAACTCCTGTGCCGGTGCCTGTGCCGCCTGGAGCCTCGGTGGCTCCCCCCCTTTGTGGAGCTGGCCCAGCAGCAGGGTGGGCCGGGCTGGGGGGCTGGAGGCCCAGGGTTGCCCCTGTACAGACGAGCTTTGGCCGTGCTAGGTGAGGGAGGGACCAGACTGGAGGCACTAGAGATTGAGCTGCTTTTGGGCAGCAGGCGGCCCAAGGCTGTGCTGCAAGCCGTGGGGCAGCTAGTGCTACAGGAGCAGTGGGAGCGGGCTCTGGAGGCTGGCCTGGCCCTCGGGCCCTCCAGCCCCCTGCTTCGAAGCGAGATCTTCAAACTGCTGCTGGCCGAGTTTGCCCAGCACCGCCGGCTCGATGCTCACCTTCCCCTTCTCTGCCGCCTGTGCCCCCCAGAACTGGCTCCCGATGAGCTCTTGCTTCTCCTGAGGACACACCTCCCGGATGAGGGGGGACCCCAAACCCCATTCCCTGAGCCTGGGGCAGAGCCCCCTCTCACAGTGGGCTTGCTCAGAACCCTGCTGAGGCAGACTGGGGCTCAAGGACGGCCCTTGGGCCCAGTCCTCAGCCGGTATGAGGACATCCTGTGGGACCCAGGCACGCCACCCCCCACTCCACCTCGGGGACCTGTGTCCACCCCGCAGGCATCAGACCAGCCAGGCCTGGAGCCCCGGCACCATCTGGACAGGGCCTGTGTGACGGACTCAGGAAGTCACTTGTAG

Related Sequences

XP_004866438.1 Protein

Hps6 PREDICTED: Hermansky-Pudlak syndrome 6 protein [Heterocephalus glaber]

Length: 793 aa      View alignments
>XP_004866438.1
MKRAATLRLVSDLSDFSGAARLRELLARDPAVRVRCSADGRHLLLLSGPGAPTPQLLVAARGPGAGLERAWPEARAAPLDAFFLAWPARPALALLWESGLTELWGADLGPSWRPLHNTELYPRGAARVAAVVAPRGRLVWCEKRPDGGHRVCVRTLEPGGEDGARLGRTHVLLHHCPPFHLLASRKDVFLLPTASTWPGASHILLTWSPSKGKVTVAAPRLGLSYSKNLNPKQGDTWDFRTLLRGLPGLLSPGEPLAAHTWAPTPQGLLLLDSRGTVSLVQAHGSIRTVGALQEAPGELEGSAALGTFRGTLACGLGATLELLDLSTGRLLERKVLSTDSVHLLEPPALGMQDEEDLETRGGLRLLSALGLFHVGWEAPQSLELPSATDLVFEEACGYYQRRSLRGAQLTPEELRHNSTFQAPQALASVLQGHLPPSALLTTLRAELRDYRGLEQLKAQLVAGEEEEAVWTELAQQEVARLLRTELTGEQLAQLNTVFQALPSAAWGAVLRALQLQPDENGMLSSQAPPDVWKKVLAGTTTGKEPPNGILPPFELLCRCLCRLEPRWLPPFVELAQQQGGPGWGAGGPGLPLYRRALAVLGEGGTRLEALEIELLLGSRRPKAVLQAVGQLVLQEQWERALEAGLALGPSSPLLRSEIFKLLLAEFAQHRRLDAHLPLLCRLCPPELAPDELLLLLRTHLPDEGGPQTPFPEPGAEPPLTVGLLRTLLRQTGAQGRPLGPVLSRYEDILWDPGTPPPTPPRGPVSTPQASDQPGLEPRHHLDRACVTDSGSHL