Sequence details NCBI ID: XM_004866206.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Casp6
Gene Name caspase 6, apoptosis-related cysteine peptidase, transcript variant X1
Entrez Gene ID 101707090

Database interlinks

Part of NW_004624830.1 (Scaffold)

For more information consult the page for NW_004624830.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CASP6 ENSCPOG00000002112 (Guinea pig)

Gene Details

caspase 6, apoptosis-related cysteine peptidase

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001913, Guinea pig)

Protein Percentage 81.04%
CDS Percentage 82.03%
Ka/Ks Ratio 0.16774 (Ka = 0.1147, Ks = 0.6839)

CASP6 ENSG00000138794 (Human)

Gene Details

caspase 6, apoptosis-related cysteine peptidase

External Links

Gene Match (Ensembl Protein ID: ENSP00000265164, Human)

Protein Percentage 75.75%
CDS Percentage 74.13%
Ka/Ks Ratio 0.13941 (Ka = 0.1723, Ks = 1.2359)

Casp6 ENSMUSG00000027997 (Mouse)

Gene Details

caspase 6

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000029626, Mouse)

Protein Percentage 77.24%
CDS Percentage 77.61%
Ka/Ks Ratio 0.13193 (Ka = 0.1451, Ks = 1.0995)

Casp6 ENSRNOG00000009508 (Rat)

Gene Details

caspase 6 (Casp6), transcript variant 1, mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000013049, Rat)

Protein Percentage 78.44%
CDS Percentage 75.84%
Ka/Ks Ratio 0.10025 (Ka = 0.1488, Ks = 1.4843)

Genome Location

Sequence Coding sequence

Length: 831 bp    Location: 171467..179574   Strand: +
Raw sequence   
>XM_004866206.1
ATGGACAGGGGCATGGCCGACCCGGCGGAAGAGTACAGAATGGACCACAAGAAGAGGGGGCTGGCCCTCATCTTCAACCAGGAGTACTTCTTCTGGCAGCTGATGCTGCCGGAAAGGAGGGGCACGAACGTCGACAGGGACAACCTGGCTTGCAGGTTTTCAGAGCTGGGATTTGAAGTGAGATGCTTTAACAATCTTAAAGCAGCAGAGCTACTGAACCGAATTCACGAGGTGTCCGCCTCAAGCCACGTGGACAGCGACTGCTTTGTGTGTGCTATCCTGACCCATGGTGAAGACAACCACATCTACGCCTATGATGACAAGATTGAGATCCAATCCCTGACTGCCTTGTTCAGAGGGGACAAGTGCCAGAGCCTGGTCGGCAAACCCAAGATATTTATTATCCAGGCATGTCGGGGACAGCAGCACGACCCACCTGTGGTCCCTCTGGATGCAGTGGATTCCCAGTTCCCGGGCGCCCAGGACAACGTCACCGAGGTGGATGCGGCCACGGTGCATGCGCTTCCGGCAGGCGCTGACTTCCTCATGTGCTACTCCGTGGCCCAAGGATATTATTCTCACCGAGAAACAGTGTACGGCTCGTGGTACATCCAGGATTTGTGCACGATGCTGCAGAGACACGGGTCCACGCTGGAGTTCACAGAGCTGCTCACGCTAGTGAACAGGAAGGTTTCCCAGCGCCGCGTGGGGGTCTGCAAAGACCCTCATGCCATCGGCAAGAAGCAAATGCCCTGCTTCGCCTCCATGCTGACGAAAAAGCTGCACTTCTCACCAAAGCCAGCAATTACGGGTGGCATCATCAGTATGTAG

Related Sequences

XP_004866263.1 Protein

Casp6 PREDICTED: caspase-6 isoform X1 [Heterocephalus glaber]

Length: 276 aa      View alignments
>XP_004866263.1
MDRGMADPAEEYRMDHKKRGLALIFNQEYFFWQLMLPERRGTNVDRDNLACRFSELGFEVRCFNNLKAAELLNRIHEVSASSHVDSDCFVCAILTHGEDNHIYAYDDKIEIQSLTALFRGDKCQSLVGKPKIFIIQACRGQQHDPPVVPLDAVDSQFPGAQDNVTEVDAATVHALPAGADFLMCYSVAQGYYSHRETVYGSWYIQDLCTMLQRHGSTLEFTELLTLVNRKVSQRRVGVCKDPHAIGKKQMPCFASMLTKKLHFSPKPAITGGIISM