Sequence details NCBI ID: XM_004866191.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ptchd1
Gene Name patched domain containing 1
Entrez Gene ID 101697453

Database interlinks

Part of NW_004624829.1 (Scaffold)

For more information consult the page for NW_004624829.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PTCHD1 ENSCPOG00000009463 (Guinea pig)

Gene Details

patched domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008494, Guinea pig)

Protein Percentage 95.95%
CDS Percentage 95.42%
Ka/Ks Ratio 0.15952 (Ka = 0.0197, Ks = 0.1238)

PTCHD1 ENSG00000165186 (Human)

Gene Details

patched domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000368666, Human)

Protein Percentage 95.95%
CDS Percentage 94.71%
Ka/Ks Ratio 0.13247 (Ka = 0.0201, Ks = 0.1514)

Ptchd1 ENSMUSG00000041552 (Mouse)

Gene Details

patched domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000039443, Mouse)

Protein Percentage 95.38%
CDS Percentage 92.61%
Ka/Ks Ratio 0.0978 (Ka = 0.0233, Ks = 0.2386)

Ptchd1 ENSRNOG00000003675 (Rat)

Gene Details

patched domain containing 1 (Ptchd1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000044293, Rat)

Protein Percentage 95.27%
CDS Percentage 92.91%
Ka/Ks Ratio 0.10413 (Ka = 0.0233, Ks = 0.224)

Genome Location

Sequence Coding sequence

Length: 2667 bp    Location: 8458962..8512511   Strand: +
Raw sequence   
>XM_004866191.1
ATGCTGCGGCAGGTTCTGCACAGGGGCTTGAGGACGTGTTTCTCCCGGCTCGGCCACTTCATTGCCAGTCACCCGGTCTTCTTCGCCTCGGCGCCGGTGCTCATCTCCATCCTGCTCGGCGCCAGCTTCAGCCGCTACCAGGTCGAAGAGAGCGTGGAGCACCTGCTGGCGCCCCAGCACAGCCTGGCCAAGATCGAGCGCAACCTCGTCAACAGCCTCTTCCCGGTCAACCGCTCCAAACACCGGCTTTACTCGGACCTGCAGACCCCTGGGCGCTACGGCCGGGTCATCGTCACGTCCTCTCAGAAAGCCAACATGCTGGACCTGCACCACACCGACTTGATCTTAAAGTTACATGCTGCTGTCACCAAGATCCAGGTTCCAAGGCCTGGTTTTAATTACACGTTTGCCCACATATGTATCCTGAATAATGATAAGACTTGCATTGTGGATGACATAATACACGTCCTGCAAGAGCTAAAGAATGCTCGGGCCACCAACCGGACTAATTTTGCCATCACATACCCAATCACTCACTTAAAGGACGGGAGAGCTGTATACAATGGGCACCAGCTTGGAGGTGTCACTGTGCACAGCAAGGATCGGGTGAAATCTGCAGAGGCCATTCAGCTCACCTACTACCTACAGTCAATCAACAGTCTCAATGACATGGTGGCTGAGAGGTGGGAGTCCAGCTTCTGCGACGCTGTCAGACTGTTCCAGGAATCCAACAGCAAAGTCAAAATATACCCTTACACATCCTCATCACTGAGGGAAGATTTTCAGAAGACCAGCCGTGTGTCAGAACGCTACCTGGTCACCAGCCTGATCCTGGTGGTCACCATGGCCATCCTCTGCTGCTCCATGCAGGACTGCGTCCGCAGCAAACCTTGGCTAGGCCTGCTTGGGTTGGTAACCATAAGCTTAGCCACTCTCACCGCGGCCGGAATCATCAATCTTACTGGTGGGAAGTACAATTCTACTTTCCTAGGAGTCCCATTCATCATGCTAGGTCATGGATTATATGGGACTTTTGAAATGTTATCCTCCTGGAGGAAGACTAAAGAAGACCAACATGTTAAAGAGAGAACTGCAGCAGTCTATGCAGACTCCATGCTCTCCTTTTCTCTCACCACTGCCATGTACCTGGTCACCTTTGGCATAGGGGCCAGCCCTTTCACGAACATTGAGGCAGCCAGGATTTTCTGCTGCAATTCCTGTATTGCAATCTTCTTCAACTACCTCTATGTACTCTCATTTTACGGTTCCAGCCTTGTGTTCACTGGCTACATAGAAAACAATTACCAGCATAGTATCGTCTGTAGAAAAGTCCCAAAACCTGACGTATTGCAGGAGAAACCAGCATGGTACAGGTTTCTCCTGACCGCCAGATTCAGTGAGAACACAACTGAAGGCGAGGAAGCAAACATTTACGATAGTCACCTATTGGTATGTTTCCTCAAACGCTGTTACTGTGACTGGATAACCAACACCTATGTGAAACCTTTTGTAGTCCTCTTTTACCTTATTTATATTTCCTTTGCCTTAATGGGCTATCTGCAGGTCAGTGAAGGGTCAGACCTTAGTAACATCGTAGCAACGGCGACACAAACCATTGACTACTCTGCTGCCCAGAAAAAGTACTTTAACAACTACAGTCCTGTGATTGGGTTTTACATATATGAGTCCATAGAATACTGGAACACTAGTGTCCAAGAAGATGTTCTAGAGTACACCAAGGGGTTTGTGCGAATATCCTGGTTTGAAAGCTATTTAAATTACCTTCGGAAACTCAATGTAACCACTGGCTTGCCTAAGAAAAATTTCACAGACATGTTGAGGAATTCCTTTTTGAAAGCCCCCCAATTTTCACATTTTCAAGAAGACATCATCTTCTCTAAAAAGTACAATGATGAGGTTGATGTAGTGGCCTCCAGAATGTTTCTGGTAGCCAAGACCATGGAAACAAACAAAGAAGAACTCTATGATCTCTTGGAAACCCTGAGGAGACTTTCAGTCACCTCCAAGGTGAAGTTCATTGTCTTCAATCCATCTTTTGTGTACATGGATCGATATACCTCCTCTCTAGGAGCCCCCCTGCACAATTCCTGCATCAGTGCTTTGTTCCTGCTCTTCTTTTCAGCATTCCTGGTGGCAGATTCTCTGATTAATGTCTGGATCACTATAACAGTTGTATCTGTGGAGTTTGGAGTGATAGGTTTCATGACATTATGGAAAGTAGAACTGAACTGCATTTCTGTGTTATGCTTAATGTATGGAATTAATTATACAGTTGACAGTTGTGCTCCACTGTTATCCACATTTGTTTTGGGCAAGGATTCCACAAGAACTAAATGGGTAAAAAATGCCCTGGAAGTGCATGGAGTGGCTATTTTACAGAGTTACCTCTGCTATATTGTTGGTCTGATTCCTCTCGCAGCTGTGCCTTCAAATCTGACCTGTACACTGTTCAGGTGCTTGTTTTTAATAACATTTTTCACCTTCTTTCACTGCTTTGCCATTTTACCTGTGATACTGACTTTCCTGCCACCCTCTAAGAAGAAAAGGAAAGAGAAGAAAAATCCTGAAAACCAGGAAGAAATTGAATGTGTAGAAATGGTGGATGTCGATAGTACCCGAGTGGTTGACCAAATTACAACAGTGTGA

Related Sequences

XP_004866248.1 Protein

Ptchd1 PREDICTED: patched domain-containing protein 1 [Heterocephalus glaber]

Length: 888 aa      View alignments
>XP_004866248.1
MLRQVLHRGLRTCFSRLGHFIASHPVFFASAPVLISILLGASFSRYQVEESVEHLLAPQHSLAKIERNLVNSLFPVNRSKHRLYSDLQTPGRYGRVIVTSSQKANMLDLHHTDLILKLHAAVTKIQVPRPGFNYTFAHICILNNDKTCIVDDIIHVLQELKNARATNRTNFAITYPITHLKDGRAVYNGHQLGGVTVHSKDRVKSAEAIQLTYYLQSINSLNDMVAERWESSFCDAVRLFQESNSKVKIYPYTSSSLREDFQKTSRVSERYLVTSLILVVTMAILCCSMQDCVRSKPWLGLLGLVTISLATLTAAGIINLTGGKYNSTFLGVPFIMLGHGLYGTFEMLSSWRKTKEDQHVKERTAAVYADSMLSFSLTTAMYLVTFGIGASPFTNIEAARIFCCNSCIAIFFNYLYVLSFYGSSLVFTGYIENNYQHSIVCRKVPKPDVLQEKPAWYRFLLTARFSENTTEGEEANIYDSHLLVCFLKRCYCDWITNTYVKPFVVLFYLIYISFALMGYLQVSEGSDLSNIVATATQTIDYSAAQKKYFNNYSPVIGFYIYESIEYWNTSVQEDVLEYTKGFVRISWFESYLNYLRKLNVTTGLPKKNFTDMLRNSFLKAPQFSHFQEDIIFSKKYNDEVDVVASRMFLVAKTMETNKEELYDLLETLRRLSVTSKVKFIVFNPSFVYMDRYTSSLGAPLHNSCISALFLLFFSAFLVADSLINVWITITVVSVEFGVIGFMTLWKVELNCISVLCLMYGINYTVDSCAPLLSTFVLGKDSTRTKWVKNALEVHGVAILQSYLCYIVGLIPLAAVPSNLTCTLFRCLFLITFFTFFHCFAILPVILTFLPPSKKKRKEKKNPENQEEIECVEMVDVDSTRVVDQITTV