Sequence details NCBI ID: XM_004864997.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Tmem55b
Gene Name transmembrane protein 55B, transcript variant X1
Entrez Gene ID 101709122

Database interlinks

Part of NW_004624825.1 (Scaffold)

For more information consult the page for NW_004624825.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TMEM55B ENSCPOG00000014467 (Guinea pig)

Gene Details

transmembrane protein 55B

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013033, Guinea pig)

Protein Percentage 97.18%
CDS Percentage 94.6%
Ka/Ks Ratio 0.07935 (Ka = 0.0137, Ks = 0.1723)

TMEM55B ENSG00000165782 (Human)

Gene Details

transmembrane protein 55B

External Links

Gene Match (Ensembl Protein ID: ENSP00000381102, Human)

Protein Percentage 97.54%
CDS Percentage 93.9%
Ka/Ks Ratio 0.0578 (Ka = 0.012, Ks = 0.2084)

Tmem55b ENSMUSG00000035953 (Mouse)

Gene Details

transmembrane protein 55b

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000124782, Mouse)

Protein Percentage 95.07%
CDS Percentage 88.85%
Ka/Ks Ratio 0.06838 (Ka = 0.0282, Ks = 0.4121)

Tmem55b ENSRNOG00000009948 (Rat)

Gene Details

transmembrane protein 55B (Tmem55b), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000013225, Rat)

Protein Percentage 94.37%
CDS Percentage 89.55%
Ka/Ks Ratio 0.09042 (Ka = 0.032, Ks = 0.3541)

Genome Location

Sequence Coding sequence

Length: 855 bp    Location: 4708433..4711845   Strand: +
Raw sequence   
>XM_004864997.1
ATGGCTGCAGATGGAGAGCGTTCCCCGCTGCTGTCCGAGCCCATCGACGGTGGCGCCGGCGGCAACGGCTTAATAGGGCCGGGCGGGAGTGGGGCTGGGCCTGGGGGAGGCCTGACCCCCTCCGCACCACCGTACGGATCCGGTAAACATGCCCCGCCCCAGGCATTTCCCCCCTTTCCTGAGGGGCATCCCGCCGTGTTGCCTGGGGAGGACCCACCCCCTTACTCGCCCCTAACCAGCCCGGACAGTGGAAATGCCCCTATGATCCCCTGCCGAGTCTGCCAATCTCTCATCAACGTGGAAGGCAAAATGCATCAGCATGTAGTCAAATGTGGTGTCTGCAACGAAGCCACTCCAATCAAGAATGCACCCCCAGGGAAAAAATATGTTCGATGCCCCTGTAACTGTCTCCTTATCTGCAAAGTGTCATCCCAGCGGATTGCCTGCCCTCGGCCCTACTGCAAAAGAATCATCAACCTGGGGCCTGTGCATCCAGGACCTCTGAGTCCAGAACCACAGCCAACGGGTGTTAGGGTCATCTGTGGACATTGCAAGAATACTTTTCTGTGGACTGAGTTCACAGACCGAACTTTGGCACGTTGCCCCCACTGCAGGAAAGTGTCATCTATTGGGCGCAGATATCCAAGAAAGAGATGTATCTGCTGCTTCTTGCTTAGCTTACTCTTGGCAGTCACTGCCACTGGCCTTGCTTTTGGCACATGGAAACATGCACGACGATATGGAGGTATATATGCAGCCTGGGCATTTGTGATCCTGTTGGCTGTGCTGTGTTTGGGCCGGGCCCTCTACTGGGCCTGTATGAAGGTCAGCCACCCTGTCCAGAACTTCTCCTGA

Related Sequences

XP_004865054.1 Protein

Tmem55b PREDICTED: transmembrane protein 55B isoform X1 [Heterocephalus glaber]

Length: 284 aa      View alignments
>XP_004865054.1
MAADGERSPLLSEPIDGGAGGNGLIGPGGSGAGPGGGLTPSAPPYGSGKHAPPQAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGNAPMIPCRVCQSLINVEGKMHQHVVKCGVCNEATPIKNAPPGKKYVRCPCNCLLICKVSSQRIACPRPYCKRIINLGPVHPGPLSPEPQPTGVRVICGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLSLLLAVTATGLAFGTWKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS