Sequence details NCBI ID: XM_004864892.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Clec16a
Gene Name C-type lectin domain family 16, member A, transcript variant X4
Entrez Gene ID 101722045

Database interlinks

Part of NW_004624824.1 (Scaffold)

For more information consult the page for NW_004624824.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CLEC16A ENSCPOG00000002517 (Guinea pig)

Gene Details

C-type lectin domain family 16, member A

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002291, Guinea pig)

Protein Percentage 96.71%
CDS Percentage 93.74%
Ka/Ks Ratio 0.0697 (Ka = 0.0159, Ks = 0.2288)

CLEC16A ENSG00000038532 (Human)

Gene Details

C-type lectin domain family 16, member A

External Links

Gene Match (Ensembl Protein ID: ENSP00000387122, Human)

Protein Percentage 94.29%
CDS Percentage 90.13%
Ka/Ks Ratio 0.0708 (Ka = 0.0297, Ks = 0.4192)

Clec16a ENSMUSG00000068663 (Mouse)

Gene Details

C-type lectin domain family 16, member A

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000065423, Mouse)

Protein Percentage 92.53%
CDS Percentage 88.04%
Ka/Ks Ratio 0.07726 (Ka = 0.0401, Ks = 0.5188)

Clec16a ENSRNOG00000002588 (Rat)

Gene Details

Protein Clec16a

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000003541, Rat)

Protein Percentage 90.11%
CDS Percentage 87.24%
Ka/Ks Ratio 0.10084 (Ka = 0.0531, Ks = 0.5266)

Genome Location

Sequence Coding sequence

Length: 3102 bp    Location: 8174678..8399433   Strand: +
Raw sequence   
>XM_004864892.1
ATGTTTGGCCGCTCGCGGAGCTGGGTGGGCGGGGGCCATGGCAAGTCGTCCCGTAACATCCACTCCTTGGACCACCTCAAGTATTTGTACCATGTTTTGACCAAAAACACAACAGTCACAGAACAGAACCGAAACCTGCTGGTAGAGACCATTCGTTCCATCACCGAGATCCTGATTTGGGGAGATCAAAATGATAGCTCTGTATTTGACTTCTTCCTGGAGAAGAACATGTTTGTCTTCTTCTTGAACATCCTACGGCAGAAATCAGGCCGCTACGTGTGCGTTCAGCTGCTGCAGACCTTGAACATCCTCTTTGAGAATATCAGTCATGAGACCTCGCTCTATTATTTGCTGTCTAATAACTATGTAAATTCTATCATTGTTCATAAATTTGACTTTTCTGATGAGGAGATTATGGCATATTATATATCATTCCTGAAGACACTTTCACTAAAACTCAACAACCACACTGTCCATTTCTTTTACAATGAGCATACCAATGACTTTGCCCTATACACAGAAGCCATCAAATTTTTCAATCACCCTGAAAGCATGGTTCGGATTGCTGTAAGAACCATAACTTTGAACGTCTATAAAGTGGACAACCAGGCCATGCTGCACTATATCAGAGATAAAACTGCCGTCCCTTACTTCTCCAATTTGGTCTGGTTCATTGGGAGCCACGTGATTGAACTTGACACCTGTGTGCAGACTGATGAGGAGCACCGGAATCGGGGGAAACTGAGTGACCTAGTAGCTGAGCACCTAGACCACCTGCACTATCTCAATGACATCCTGATCATCAACTGTGAGTTCCTCAACGATGTGCTCACAGACCATTTACTCAATAGGCTCTTCTTGCCACTCTACGTGTACTCTCTGGAGAACCCGGACAAGGGAGGAGAACGACCGAAAATCAGCCTGCCGGTATCTCTCTATCTTCTGTCCCAGGTCTTCCTCATTATACATCACGCGCCACTGGTGAACTCATTAGCTGAAGTCATTCTGAACGGTGATCTTTCTGAGATGTACGCTAAGACTGAACAGGATGTTCAGAGGAGTTCTGCCAAGCCCAGCATTCGGTGCTTCATTAAACCCACCGAGACGCTCGAGCGGTCCCTTGAGATGAACAAGCACAAGGGCAAGAGGCGGGTGCAAAAGAGACCCAACTACAAAAACGTTGGGGAGGAAGAAGATGAGGAGAAAGGGCCTGCCGAGGATGCCCAGGAAGACACCGAGAAGGCTAAAGAGATTGAGATGGTGATCATGGAGCACAGCAAGCTCTCAGAGTTGGCCGCCAGCACCTCTGTGCAGGAGCAGAACACTACGGACGAGGAGAAGAGTGCCGCCGCCACATGCTCCGAGAGCCTGCAGTGGAGCAGACCCTTCCTGGATATGGTGTACCATGCCCTGGACAGCCCTGACGATGATTACCATGCCCTCTTCGTGCTCTGCCTCCTGTATGCCATGTCTCACAACAAAGGCATGGATCCTGAAAAACTAGAGCGAATCCAGCTACCGGTGCCAAATGTGGCTGAGAAGACCACCTACAACCATCTGCTGGCTGAGAGACTCATCAGGATCATGAACAATGCTGCCCAGCCAGATGGGAAGATCCGCTTGGCCACGCTGGAGCTGAGCTGCCTGCTCCTGAAGCAGCAAGTCCTGACCAGCTCCAGCTGTATCATAAAGGACGTCCACCTGGCCTGCCTGGAGGGCGCGAGAGAAGAGAGTGTCCACCTGGTTCGGCATTTCTATAAGGGGGAAGAAATTTTTTTGGACATGTTTGAAGATGAGTACAGGAGCATGACAATGAAGCCCATGAACGTGGAGTATCTCATGATGGACGCTTCCATCCTGCTGCCTCCAACAGGCACACCACTGACGGGCATAGACTTTGTGAAGCGGCTGCCCTGTGGTGACGTGGAGAAGACCCGGCGGGCCATCCGTGTGTTCTTCATGCTGCGATCCCTATCGCTGCAGCTTCAAGGGGAGCCTGAGACCCAGCTGCCATTGACTCGGGAGGAGGACCTGATCAAAACCGATGACGTCCTGGACCTGAATAACAGTGACCTGATCGCATGCACAGTGATCACCAAGGATGGCAGCATGGTCCAGCGATTCCTGGCTGTTGATATTTACCAGATGAGTCTGGTGGAGCCTGACGTGTCCCGGCTTGGCTGGGGAGTGGTCAAGTTTGCAGGGCTTCTCCAGGACATGCAGGTGACTGGTGTGGAGGACGACAGCCGTGCCCTGAACATCACCATCCACAAACCCGCATCCAGCCCCCATTCCAAGCCCTTCCCCATCCTGCAGGCCACCTTCGTCTTCTCAGACCACATCCGCTGCATCATTGCCAAGCAGCGCCTGGCCAAGGGCCGCATCCAGGCGAGGCGCATGAAGATGCAGAGGATAGCTGCACTCCTGGACCTCCCAATCCAGCCAACAGCAGAAGTCCTAGGATTTGGGCTTGGCACCTCCGCTTCCACCCAGCACCTGCCTTTCCGCTTCTATGATCAGGGCCGCCGAGGCAGCAGTGACCCCACAGTGCAGCGCTCTGTGTTTGCATCTGTGGACAAGGTGCCAGGCTTTGCCGTGGCCCAGTGCATAAACCAGCACAGCTCCCCATCCCTGTCATCACCATCACCGCCTTCCGCCAGTGGGAGCCCCAGCGGCAGCGGGAGCACCAGCCACTGTGACTCGGGGGGCTCGTCTTCCACACCCTCTGCAGCCCAGAGCCCAGCAGACGCCCCCACAACTCCAGAACAGCCTCAGCCTCACCTTCCTGACCAGTTGGAGATCATCAATGAAATGGAAGCAGAAGCCAAGCCCAGCAAGAACTCAGCCAGGTGCACAGAGGTGGAGACAGCACACCTGTCCCCCAGCCTGCTCCCCGCTCCACAGCCTACCATCTCCTTGCTCTATGAGGACACTGCTGACACACTGAGCGTCGAGTCACTGACCCTGGTCCCCCCAGTCGATCCCCATAGCCTCCACACCCTCACCGGCCTCCCCCAGCCTCCCACACCAACCACAACGTGCCCAGAGAGCCCAGACGAGGAGGCTGCATGTGTGGAGCCTGCAGGCCTCTCCAAGCACTGA

Related Sequences

XP_004864949.1 Protein

Clec16a PREDICTED: protein CLEC16A isoform X4 [Heterocephalus glaber]

Length: 1033 aa      View alignments
>XP_004864949.1
MFGRSRSWVGGGHGKSSRNIHSLDHLKYLYHVLTKNTTVTEQNRNLLVETIRSITEILIWGDQNDSSVFDFFLEKNMFVFFLNILRQKSGRYVCVQLLQTLNILFENISHETSLYYLLSNNYVNSIIVHKFDFSDEEIMAYYISFLKTLSLKLNNHTVHFFYNEHTNDFALYTEAIKFFNHPESMVRIAVRTITLNVYKVDNQAMLHYIRDKTAVPYFSNLVWFIGSHVIELDTCVQTDEEHRNRGKLSDLVAEHLDHLHYLNDILIINCEFLNDVLTDHLLNRLFLPLYVYSLENPDKGGERPKISLPVSLYLLSQVFLIIHHAPLVNSLAEVILNGDLSEMYAKTEQDVQRSSAKPSIRCFIKPTETLERSLEMNKHKGKRRVQKRPNYKNVGEEEDEEKGPAEDAQEDTEKAKEIEMVIMEHSKLSELAASTSVQEQNTTDEEKSAAATCSESLQWSRPFLDMVYHALDSPDDDYHALFVLCLLYAMSHNKGMDPEKLERIQLPVPNVAEKTTYNHLLAERLIRIMNNAAQPDGKIRLATLELSCLLLKQQVLTSSSCIIKDVHLACLEGAREESVHLVRHFYKGEEIFLDMFEDEYRSMTMKPMNVEYLMMDASILLPPTGTPLTGIDFVKRLPCGDVEKTRRAIRVFFMLRSLSLQLQGEPETQLPLTREEDLIKTDDVLDLNNSDLIACTVITKDGSMVQRFLAVDIYQMSLVEPDVSRLGWGVVKFAGLLQDMQVTGVEDDSRALNITIHKPASSPHSKPFPILQATFVFSDHIRCIIAKQRLAKGRIQARRMKMQRIAALLDLPIQPTAEVLGFGLGTSASTQHLPFRFYDQGRRGSSDPTVQRSVFASVDKVPGFAVAQCINQHSSPSLSSPSPPSASGSPSGSGSTSHCDSGGSSSTPSAAQSPADAPTTPEQPQPHLPDQLEIINEMEAEAKPSKNSARCTEVETAHLSPSLLPAPQPTISLLYEDTADTLSVESLTLVPPVDPHSLHTLTGLPQPPTPTTTCPESPDEEAACVEPAGLSKH